Variant report

Variant	rs12062584
Chromosome Location	chr1:93962720-93962721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93956366..93958435-chr1:93961316..93964095,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1079750	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11164926	0.80[EUR][1000 genomes]
rs11164930	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11164932	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11164940	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11811006	0.80[EUR][1000 genomes]
rs12060221	0.84[EUR][1000 genomes]
rs12069440	0.90[ASN][1000 genomes]
rs12086857	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12096122	0.81[ASN][1000 genomes]
rs12096561	0.84[EUR][1000 genomes]
rs12409932	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12410123	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582773	0.80[EUR][1000 genomes]
rs17109951	0.86[EUR][1000 genomes]
rs17109997	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17387059	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895903	0.80[EUR][1000 genomes]
rs2011212	0.83[EUR][1000 genomes]
rs2081568	0.84[EUR][1000 genomes]
rs2624437	0.92[EUR][1000 genomes]
rs57710451	0.83[EUR][1000 genomes]
rs59792151	0.83[EUR][1000 genomes]
rs60822733	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61580948	0.83[EUR][1000 genomes]
rs6688111	0.86[EUR][1000 genomes]
rs67012296	0.83[EUR][1000 genomes]
rs72721009	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72721010	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72721014	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72721019	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72961351	0.82[EUR][1000 genomes]
rs7339890	0.83[EUR][1000 genomes]
rs7539210	0.89[EUR][1000 genomes]
rs7541984	0.81[EUR][1000 genomes]
rs7553695	0.95[EUR][1000 genomes]
rs900310	0.83[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:93950400-93974800	Weak transcription	HepG2	liver
7	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
9	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:93956200-93974000	Weak transcription	HMEC	breast
13	chr1:93956400-93963400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach
15	chr1:93956600-93967000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:93958000-93997200	Weak transcription	HSMMtube	muscle
17	chr1:93958400-93965600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:93958800-93991800	Weak transcription	Gastric	stomach
19	chr1:93959000-93974800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:93959800-93964000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:93959800-93964600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:93960000-93964200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:93960000-93965400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:93960000-93965800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:93960000-93968400	Weak transcription	Small Intestine	intestine
26	chr1:93960200-93965800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:93960200-93974400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:93960400-93964200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr1:93960400-93964600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:93960400-93964600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:93960400-93970200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:93961000-93988400	Weak transcription	HUVEC	blood vessel
33	chr1:93961600-93965000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:93961600-93965800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:93962600-93984200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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