Variant report

Variant	rs11164932
Chromosome Location	chr1:93922173-93922174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93921576..93924878-chr1:93939803..93941437,3	K562	blood:
2	chr1:93921576..93924345-chr1:93939803..93941370,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1079750	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11164930	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11164940	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062584	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069440	0.95[ASN][1000 genomes]
rs12086857	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096122	0.86[ASN][1000 genomes]
rs12409932	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12410123	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17109997	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17387059	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2624437	0.85[EUR][1000 genomes]
rs60822733	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61580948	0.81[AMR][1000 genomes]
rs67012296	0.81[AMR][1000 genomes]
rs72721009	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721010	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721014	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721019	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539210	0.82[EUR][1000 genomes]
rs7553695	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93915200-93922200	Weak transcription	Gastric	stomach
2	chr1:93915200-93923800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:93915200-93926800	Weak transcription	Pancreas	Pancrea
4	chr1:93915200-93927800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:93915200-93928600	Weak transcription	Ovary	ovary
6	chr1:93915200-93929600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:93915200-93929800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:93915200-93935800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:93915200-93937000	Weak transcription	Esophagus	oesophagus
10	chr1:93915200-93937000	Weak transcription	Lung	lung
11	chr1:93915400-93922400	Weak transcription	Fetal Stomach	stomach
12	chr1:93915400-93924600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:93915400-93926600	Weak transcription	Liver	Liver
14	chr1:93915400-93926800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:93915400-93926800	Weak transcription	Psoas Muscle	Psoas
16	chr1:93915400-93929800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:93915400-93931000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:93916000-93922400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:93916400-93923800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:93916400-93924600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:93916400-93926600	Weak transcription	Primary B cells from cord blood	blood
22	chr1:93916400-93934800	Weak transcription	Fetal Intestine Large	intestine
23	chr1:93916600-93923800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:93916600-93925600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr1:93916600-93926000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr1:93916800-93922200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:93916800-93922600	Weak transcription	Fetal Lung	lung
28	chr1:93916800-93925600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:93916800-93929400	Weak transcription	Brain Germinal Matrix	brain
30	chr1:93916800-93930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:93916800-93932800	Weak transcription	Fetal Kidney	kidney
32	chr1:93917600-93937200	Weak transcription	Fetal Brain Male	brain
33	chr1:93918200-93928800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr1:93919800-93922200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:93919800-93922400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:93919800-93922600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:93919800-93923800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:93919800-93937000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:93920000-93922200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:93920000-93922400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:93920000-93922400	Weak transcription	HepG2	liver
42	chr1:93920000-93922400	Weak transcription	HSMM	muscle
43	chr1:93920000-93922600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr1:93920000-93924200	Weak transcription	HMEC	breast
45	chr1:93920000-93924400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:93920000-93927600	Weak transcription	Hela-S3	cervix
47	chr1:93920000-93928200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:93920000-93936800	Weak transcription	NH-A	brain
49	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr1:93920400-93926000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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