Variant report

Variant	rs12410123
Chromosome Location	chr1:93957943-93957944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93956366..93958435-chr1:93961316..93964095,2	K562	blood:
2	chr1:93913552..93915677-chr1:93955998..93958908,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137942	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1079750	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs11164930	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11164932	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11164940	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12062584	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069440	0.95[ASN][1000 genomes]
rs12086857	0.82[LWK][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12096122	0.86[ASN][1000 genomes]
rs12409932	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12410122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17109997	1.00[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17387059	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2624437	0.88[CHD][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs60822733	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721009	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72721010	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72721014	1.00[ASN][1000 genomes]
rs72721019	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7539210	0.88[CHD][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:93950200-93959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:93950400-93974800	Weak transcription	HepG2	liver
10	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:93951600-93960000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:93952400-93958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
14	chr1:93952800-93959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:93954800-93959200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:93955800-93960000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:93956000-93962000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:93956200-93974000	Weak transcription	HMEC	breast
22	chr1:93956400-93960600	Weak transcription	HUVEC	blood vessel
23	chr1:93956400-93963400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach
25	chr1:93956600-93967000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr1:93956800-93959800	Weak transcription	Small Intestine	intestine
27	chr1:93957200-93958600	Weak transcription	Left Ventricle	heart
28	chr1:93957200-93962000	Weak transcription	Stomach Mucosa	stomach

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