Variant report

Variant	rs11164940
Chromosome Location	chr1:93954301-93954302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93952150..93954485-chr1:94031536..94034425,2	K562	blood:
2	chr1:93912994..93915026-chr1:93952273..93954304,2	K562	blood:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction
ENSG00000137942	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1079750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11164930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164932	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060221	0.83[EUR][1000 genomes]
rs12062584	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069440	0.95[ASN][1000 genomes]
rs12086857	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096122	0.86[ASN][1000 genomes]
rs12096561	0.83[EUR][1000 genomes]
rs12409932	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12410122	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12410123	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17109951	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17109997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17131741	1.00[CEU][hapmap]
rs17387059	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2011212	0.81[EUR][1000 genomes]
rs2081568	0.83[EUR][1000 genomes]
rs2624437	1.00[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs3088371	0.85[CEU][hapmap]
rs57710451	0.81[EUR][1000 genomes]
rs59792151	0.81[EUR][1000 genomes]
rs60822733	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61580948	0.81[EUR][1000 genomes]
rs6688111	0.84[EUR][1000 genomes]
rs67012296	0.81[EUR][1000 genomes]
rs72721009	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721010	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721014	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721019	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961351	0.80[EUR][1000 genomes]
rs7339890	0.81[EUR][1000 genomes]
rs7539210	1.00[CEU][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7553695	0.94[EUR][1000 genomes]
rs900310	0.81[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
3	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:93944200-93954800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
10	chr1:93950200-93959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:93950400-93974800	Weak transcription	HepG2	liver
12	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:93951600-93960000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:93951800-93954800	Weak transcription	HUVEC	blood vessel
15	chr1:93952400-93956600	Weak transcription	Small Intestine	intestine
16	chr1:93952400-93958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
18	chr1:93952800-93959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:93953400-93954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:93953600-93955600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:93954000-93954600	Enhancers	Fetal Kidney	kidney
22	chr1:93954000-93954800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:93954000-93955000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:93954200-93954400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:93954200-93955400	Weak transcription	Ovary	ovary
26	chr1:93954200-93956800	Weak transcription	Left Ventricle	heart
27	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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