Variant report

Variant	rs11164922
Chromosome Location	chr1:93877353-93877354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1079750	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11164930	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11164940	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11811006	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12060221	0.81[EUR][1000 genomes]
rs12069440	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12096122	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12096561	0.81[EUR][1000 genomes]
rs12404947	0.81[EUR][1000 genomes]
rs12410122	1.00[JPT][hapmap]
rs12410123	1.00[JPT][hapmap]
rs12411095	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1582773	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17109951	1.00[CEU][hapmap]
rs17109997	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs17131709	0.81[EUR][1000 genomes]
rs17131710	0.81[EUR][1000 genomes]
rs17131718	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17131741	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1895903	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2011212	0.82[EUR][1000 genomes]
rs2038698	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2081568	0.83[EUR][1000 genomes]
rs2624437	0.85[CEU][hapmap]
rs3088371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41292137	0.81[EUR][1000 genomes]
rs57710451	0.85[EUR][1000 genomes]
rs59792151	0.82[EUR][1000 genomes]
rs60013975	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60458375	0.81[EUR][1000 genomes]
rs61101021	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61580948	0.82[EUR][1000 genomes]
rs66501175	0.81[EUR][1000 genomes]
rs66804824	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67002303	0.81[EUR][1000 genomes]
rs67012296	0.82[EUR][1000 genomes]
rs67337461	0.81[EUR][1000 genomes]
rs67395827	0.81[EUR][1000 genomes]
rs67723709	0.81[EUR][1000 genomes]
rs67768103	0.81[EUR][1000 genomes]
rs67998457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717334	0.81[EUR][1000 genomes]
rs72717352	0.81[EUR][1000 genomes]
rs72719120	0.81[EUR][1000 genomes]
rs72719185	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72959223	0.81[EUR][1000 genomes]
rs72959288	0.81[EUR][1000 genomes]
rs72961351	0.81[EUR][1000 genomes]
rs7339890	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7539210	0.85[CEU][hapmap]
rs900310	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93876200-93877600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr1:93876800-93877400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:93877000-93877400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:93877000-93877600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr1:93877000-93877600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr1:93877200-93877400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
7	chr1:93877200-93877600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:93877200-93877600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr1:93877200-93877600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:93877200-93878200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:93877200-93878200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:93877200-93878800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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