Variant report

Variant	rs72756342
Chromosome Location	chr1:212753572-212753573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212751031..212755114-chr1:212792767..212796385,4	K562	blood:
2	chr1:212752659..212754455-chr1:212760366..212761960,2	K562	blood:
3	chr1:212752372..212753937-chr1:212778628..212781608,2	K562	blood:
4	chr1:212752803..212755177-chr1:212757732..212760113,2	MCF-7	breast:
5	chr1:212752565..212754879-chr1:212767873..212770095,2	K562	blood:
6	chr1:212751384..212755083-chr1:212773324..212775569,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10157307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11804839	1.00[ASN][1000 genomes]
rs11811628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062234	1.00[ASN][1000 genomes]
rs12067814	1.00[ASN][1000 genomes]
rs12073991	1.00[ASN][1000 genomes]
rs12738431	1.00[ASN][1000 genomes]
rs12739468	1.00[ASN][1000 genomes]
rs13374814	1.00[ASN][1000 genomes]
rs17019384	1.00[ASN][1000 genomes]
rs28526731	1.00[ASN][1000 genomes]
rs34004542	1.00[ASN][1000 genomes]
rs34799814	1.00[ASN][1000 genomes]
rs35432717	1.00[ASN][1000 genomes]
rs36061296	1.00[ASN][1000 genomes]
rs41314256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56862824	1.00[ASN][1000 genomes]
rs57377970	1.00[ASN][1000 genomes]
rs57847431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58338531	1.00[ASN][1000 genomes]
rs58752775	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58876418	1.00[ASN][1000 genomes]
rs59261419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59344104	1.00[ASN][1000 genomes]
rs59408650	1.00[ASN][1000 genomes]
rs60399349	1.00[ASN][1000 genomes]
rs60521851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61450816	1.00[ASN][1000 genomes]
rs61526449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66534834	1.00[ASN][1000 genomes]
rs66611603	1.00[ASN][1000 genomes]
rs6694503	1.00[ASN][1000 genomes]
rs6697091	1.00[ASN][1000 genomes]
rs67410757	1.00[ASN][1000 genomes]
rs67529467	1.00[ASN][1000 genomes]
rs67770348	1.00[ASN][1000 genomes]
rs68028120	1.00[ASN][1000 genomes]
rs68047079	1.00[ASN][1000 genomes]
rs72754308	1.00[ASN][1000 genomes]
rs72754311	1.00[ASN][1000 genomes]
rs72754313	1.00[ASN][1000 genomes]
rs72754324	1.00[ASN][1000 genomes]
rs72754335	1.00[ASN][1000 genomes]
rs72754344	1.00[ASN][1000 genomes]
rs72754346	1.00[ASN][1000 genomes]
rs72754358	1.00[ASN][1000 genomes]
rs72754374	1.00[ASN][1000 genomes]
rs72754375	1.00[ASN][1000 genomes]
rs72754384	1.00[ASN][1000 genomes]
rs72756307	1.00[ASN][1000 genomes]
rs72756315	1.00[ASN][1000 genomes]
rs72756328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756332	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756348	1.00[ASN][1000 genomes]
rs73073999	1.00[ASN][1000 genomes]
rs73088569	1.00[ASN][1000 genomes]
rs74138382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512515	1.00[ASN][1000 genomes]
rs7524087	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	esv2757770	chr1:212648143-212843103	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
5	esv2758996	chr1:212648143-212843103	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
6	nsv428588	chr1:212705588-212862875	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212752000-212754400	Enhancers	Placenta	Placenta
2	chr1:212752400-212753600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:212752800-212753800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:212753200-212753800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:212753200-212755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:212753400-212753600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:212753400-212753600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:212753400-212753600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:212753400-212753600	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr1:212753400-212753600	Enhancers	Hela-S3	cervix
11	chr1:212753400-212753600	Active TSS	Osteobl	bone
12	chr1:212753400-212753800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:212753400-212753800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:212753400-212753800	Enhancers	Primary B cells from peripheral blood	blood
15	chr1:212753400-212753800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:212753400-212753800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:212753400-212753800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:212753400-212753800	Active TSS	Brain Angular Gyrus	brain
19	chr1:212753400-212753800	Active TSS	Brain Anterior Caudate	brain
20	chr1:212753400-212753800	Active TSS	Brain Cingulate Gyrus	brain
21	chr1:212753400-212753800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:212753400-212753800	Active TSS	Duodenum Mucosa	Duodenum
23	chr1:212753400-212753800	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr1:212753400-212753800	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr1:212753400-212753800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:212753400-212753800	Active TSS	A549	lung
27	chr1:212753400-212753800	Flanking Active TSS	HepG2	liver
28	chr1:212753400-212753800	Active TSS	NH-A	brain
29	chr1:212753400-212753800	Active TSS	NHDF-Ad	bronchial
30	chr1:212753400-212754000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:212753400-212754000	Active TSS	Brain Substantia Nigra	brain
32	chr1:212753400-212754000	Enhancers	GM12878-XiMat	blood

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