Variant report

Variant rs56862824
Chromosome Location chr1:212643380-212643381
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212636800-212644400 Enhancers Placenta Placenta
2 chr1:212637600-212644800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr1:212638200-212643400 Weak transcription Spleen Spleen
4 chr1:212641000-212650400 Weak transcription Fetal Intestine Large intestine
5 chr1:212641600-212658200 Weak transcription Gastric stomach
6 chr1:212641800-212643400 Weak transcription Fetal Lung lung
7 chr1:212641800-212655200 Weak transcription Right Atrium heart
8 chr1:212642400-212644200 Enhancers Placenta Amnion Placenta Amnion
9 chr1:212642600-212643400 Enhancers Brain Cingulate Gyrus brain
10 chr1:212642600-212643400 Enhancers Brain Hippocampus Middle brain
11 chr1:212642600-212644200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:212642600-212644200 Enhancers Brain Anterior Caudate brain
13 chr1:212642800-212644200 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr1:212642800-212644200 Enhancers NHEK skin
15 chr1:212643000-212643400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:212643000-212643600 Enhancers NHDF-Ad bronchial
17 chr1:212643000-212644200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:212643000-212644200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:212643000-212644200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:212643200-212643400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:212643200-212643400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:212643200-212643400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:212643200-212643400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
24 chr1:212643200-212643400 Flanking Active TSS Brain Inferior Temporal Lobe brain
25 chr1:212643200-212643400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
26 chr1:212643200-212643400 Flanking Active TSS Brain Substantia Nigra brain
27 chr1:212643200-212643400 Flanking Active TSS Colon Smooth Muscle Colon
28 chr1:212643200-212643400 Bivalent Enhancer Fetal Muscle Trunk muscle
29 chr1:212643200-212643400 Enhancers A549 lung
30 chr1:212643200-212643400 Enhancers Hela-S3 cervix
31 chr1:212643200-212643400 Enhancers HSMM muscle
32 chr1:212643200-212643400 Flanking Active TSS HSMMtube muscle
33 chr1:212643200-212643400 Enhancers NHLF lung
34 chr1:212643200-212643400 Flanking Active TSS Osteobl bone
35 chr1:212643200-212643600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:212643200-212643600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:212643200-212643800 Flanking Active TSS Muscle Satellite Cultured Cells --
38 chr1:212643200-212643800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:212643200-212643800 Enhancers Fetal Brain Male brain
40 chr1:212643200-212643800 Enhancers Left Ventricle heart
41 chr1:212643200-212643800 Enhancers Right Ventricle heart
42 chr1:212643200-212643800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
43 chr1:212643200-212644000 Enhancers Cortex derived primary cultured neurospheres brain
44 chr1:212643200-212644000 Flanking Active TSS Adipose Nuclei Adipose
45 chr1:212643200-212644000 Enhancers Fetal Muscle Leg muscle
46 chr1:212643200-212644000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
47 chr1:212643200-212644000 Flanking Active TSS Stomach Smooth Muscle stomach
48 chr1:212643200-212644200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr1:212643200-212644200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:212643200-212644200 Enhancers Brain Angular Gyrus brain

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