The 2.0 version of rSNPBase

Variant report

Variant rs351402
Chromosome Location chr1:212462522-212462523
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212457400-212463400 Active TSS Right Ventricle heart
2 chr1:212457600-212462800 Active TSS Psoas Muscle Psoas
3 chr1:212458000-212463400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr1:212459800-212462800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr1:212459800-212463000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
6 chr1:212459800-212463000 Flanking Active TSS Primary B cells from cord blood blood
7 chr1:212460000-212463800 Active TSS Right Atrium heart
8 chr1:212460200-212462800 Flanking Active TSS Primary hematopoietic stem cells blood
9 chr1:212460200-212462800 Flanking Active TSS Dnd41 blood
10 chr1:212460200-212489200 Weak transcription Spleen Spleen
11 chr1:212460400-212462600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:212460400-212463000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
13 chr1:212460800-212464400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:212461000-212462600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr1:212461000-212462600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:212461000-212462600 Enhancers Primary B cells from peripheral blood blood
17 chr1:212461000-212462600 Weak transcription Brain Angular Gyrus brain
18 chr1:212461000-212462600 Enhancers Fetal Brain Female brain
19 chr1:212461000-212462800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
20 chr1:212461000-212463000 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr1:212461000-212464400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:212461000-212464600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:212461000-212464600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:212461000-212464600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:212461000-212464800 Weak transcription Placenta Placenta
26 chr1:212461000-212466000 Enhancers Colon Smooth Muscle Colon
27 chr1:212461000-212469000 Enhancers Brain Substantia Nigra brain
28 chr1:212461000-212476200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:212461200-212466600 Enhancers NHEK skin
30 chr1:212461200-212467200 Enhancers HMEC breast
31 chr1:212461400-212462600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:212461400-212462600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
33 chr1:212461400-212462800 Flanking Active TSS Liver Liver
34 chr1:212461400-212463000 Flanking Active TSS Adipose Nuclei Adipose
35 chr1:212461400-212464400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
36 chr1:212461600-212463400 Transcr. at gene 5' and 3' K562 blood
37 chr1:212461600-212463600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:212461600-212463600 Enhancers Sigmoid Colon Sigmoid Colon
39 chr1:212461600-212463800 Enhancers Small Intestine intestine
40 chr1:212461600-212464400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:212461600-212465400 Enhancers iPS-15b Cell Line embryonic stem cell
42 chr1:212461600-212465600 Flanking Active TSS Primary T cells from cord blood blood
43 chr1:212461600-212468800 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:212461800-212462600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
45 chr1:212461800-212462800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:212461800-212463400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:212461800-212463600 Enhancers Primary hematopoietic stem cells short term culture blood
48 chr1:212461800-212463600 Active TSS Stomach Smooth Muscle stomach
49 chr1:212461800-212463800 Enhancers Cortex derived primary cultured neurospheres brain
50 chr1:212461800-212464400 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015