Variant report

Variant	rs72773586
Chromosome Location	chr5:94062443-94062444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1006627	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1026232	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11135406	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11135409	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11135410	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11955417	0.89[ASN][1000 genomes]
rs11955446	0.89[ASN][1000 genomes]
rs12514098	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515845	0.86[ASN][1000 genomes]
rs12519472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12521289	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12523457	0.87[ASN][1000 genomes]
rs12651956	0.82[ASN][1000 genomes]
rs12653116	0.80[ASN][1000 genomes]
rs12653594	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12653819	0.80[ASN][1000 genomes]
rs12655669	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12659125	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13156960	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1562911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17083824	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17083825	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17083826	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17083873	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083896	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083911	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083945	0.85[ASN][1000 genomes]
rs2003118	0.87[ASN][1000 genomes]
rs2044910	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2047319	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2346764	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2346765	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34074526	0.87[ASN][1000 genomes]
rs35111621	0.87[ASN][1000 genomes]
rs3947399	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4537040	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57041121	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61152231	0.87[ASN][1000 genomes]
rs61238929	0.89[ASN][1000 genomes]
rs66666052	0.82[ASN][1000 genomes]
rs66901899	0.91[ASN][1000 genomes]
rs67573880	0.87[ASN][1000 genomes]
rs67577452	0.87[ASN][1000 genomes]
rs67674687	0.89[ASN][1000 genomes]
rs6869588	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6879347	0.81[EUR][1000 genomes]
rs6890092	0.80[ASN][1000 genomes]
rs6893587	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72771700	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72773504	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72773507	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72773513	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72773522	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72773523	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72773524	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72773541	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72773556	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72773573	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72773592	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72775304	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7735473	0.91[ASN][1000 genomes]
rs7737187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7737366	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs880264	0.86[ASN][1000 genomes]
rs9791082	0.84[ASN][1000 genomes]
rs9918142	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94039000-94064600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:94048600-94071600	Weak transcription	Lung	lung
3	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
5	chr5:94049800-94077600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94050600-94065400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:94050600-94069000	Weak transcription	Hela-S3	cervix
8	chr5:94051000-94067800	Weak transcription	Fetal Thymus	thymus
9	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94061600-94063600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:94061800-94063400	Enhancers	Fetal Lung	lung

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