Variant report

Variant	rs61238929
Chromosome Location	chr5:94079820-94079821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94078591..94081129-chr5:94083066..94085873,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1006626	0.82[ASN][1000 genomes]
rs1026232	0.85[ASN][1000 genomes]
rs11135410	0.86[ASN][1000 genomes]
rs11135411	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1124668	0.81[ASN][1000 genomes]
rs11955417	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11955446	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12514098	0.89[ASN][1000 genomes]
rs12515845	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12519472	0.84[ASN][1000 genomes]
rs12523457	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12651956	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12653116	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12655521	0.80[ASN][1000 genomes]
rs12655665	0.80[ASN][1000 genomes]
rs12657227	0.80[ASN][1000 genomes]
rs12659125	0.85[ASN][1000 genomes]
rs12659597	0.80[ASN][1000 genomes]
rs13156960	0.84[ASN][1000 genomes]
rs1390644	0.82[ASN][1000 genomes]
rs1562911	0.84[ASN][1000 genomes]
rs17083887	0.81[ASN][1000 genomes]
rs17083888	0.80[ASN][1000 genomes]
rs17083945	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2003118	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2032813	0.82[ASN][1000 genomes]
rs2044911	0.80[ASN][1000 genomes]
rs2132548	0.80[ASN][1000 genomes]
rs2201620	0.80[ASN][1000 genomes]
rs2270626	0.81[ASN][1000 genomes]
rs306574	0.81[ASN][1000 genomes]
rs35111621	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61152231	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6556850	0.80[ASN][1000 genomes]
rs6556851	0.80[ASN][1000 genomes]
rs66518525	0.80[ASN][1000 genomes]
rs66578784	0.81[ASN][1000 genomes]
rs66666052	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66696350	0.80[ASN][1000 genomes]
rs66901899	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67313609	0.82[ASN][1000 genomes]
rs67573880	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67577452	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67674687	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67831380	0.82[ASN][1000 genomes]
rs6890092	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72773533	0.80[ASN][1000 genomes]
rs72773547	0.82[ASN][1000 genomes]
rs72773549	0.83[ASN][1000 genomes]
rs72773573	0.84[ASN][1000 genomes]
rs72773575	0.82[ASN][1000 genomes]
rs72773586	0.89[ASN][1000 genomes]
rs72773593	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72775304	0.89[ASN][1000 genomes]
rs7735473	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7735659	0.80[ASN][1000 genomes]
rs7737187	0.84[ASN][1000 genomes]
rs7737366	0.84[ASN][1000 genomes]
rs880264	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791082	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9918142	0.81[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
3	chr5:94067000-94080600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94071000-94080000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94072600-94086200	Weak transcription	Spleen	Spleen
6	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:94077200-94080000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94079200-94081800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:94079200-94082000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94079400-94080000	Weak transcription	Fetal Thymus	thymus
11	chr5:94079600-94080000	Enhancers	Hela-S3	cervix
12	chr5:94079600-94080800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:94079800-94081800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:94079800-94081800	Weak transcription	Muscle Satellite Cultured Cells	--

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