Variant report

Variant	rs72773593
Chromosome Location	chr5:94068179-94068180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1006626	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1026232	0.83[ASN][1000 genomes]
rs11135407	0.85[EUR][1000 genomes]
rs11135408	0.86[EUR][1000 genomes]
rs11135411	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1124668	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11955417	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11955446	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12515845	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12519472	0.81[ASN][1000 genomes]
rs12523457	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12651956	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12652705	0.83[EUR][1000 genomes]
rs12653116	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12654602	0.85[EUR][1000 genomes]
rs12655521	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12655665	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12656300	0.85[EUR][1000 genomes]
rs12656694	0.85[EUR][1000 genomes]
rs12657227	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12657323	0.85[EUR][1000 genomes]
rs12659597	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1390642	0.85[EUR][1000 genomes]
rs1390644	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1451735	0.86[EUR][1000 genomes]
rs1562911	0.81[ASN][1000 genomes]
rs17083827	0.84[EUR][1000 genomes]
rs17083828	0.83[EUR][1000 genomes]
rs17083887	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17083888	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17083945	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2003118	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2032813	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2044911	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2047318	0.82[EUR][1000 genomes]
rs2122984	0.85[EUR][1000 genomes]
rs2122985	0.85[EUR][1000 genomes]
rs2132548	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2201620	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2220965	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2270626	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs306574	0.80[ASN][1000 genomes]
rs35111621	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56242961	0.84[EUR][1000 genomes]
rs56824518	0.86[EUR][1000 genomes]
rs57188935	0.82[EUR][1000 genomes]
rs60191000	0.86[EUR][1000 genomes]
rs61152231	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61238929	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6556850	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6556851	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66464936	0.86[EUR][1000 genomes]
rs66483218	0.86[EUR][1000 genomes]
rs66488253	0.85[EUR][1000 genomes]
rs66518525	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66578784	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66666052	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66694903	0.84[EUR][1000 genomes]
rs66696350	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66901899	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66936860	0.83[EUR][1000 genomes]
rs67313609	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67531524	0.84[EUR][1000 genomes]
rs67573880	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67577452	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67674687	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67831380	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67994891	0.85[EUR][1000 genomes]
rs6879384	0.86[EUR][1000 genomes]
rs6883128	0.86[EUR][1000 genomes]
rs6883326	0.86[EUR][1000 genomes]
rs6890092	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6891545	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6897550	0.86[EUR][1000 genomes]
rs72773517	0.85[EUR][1000 genomes]
rs72773526	0.85[EUR][1000 genomes]
rs72773528	0.81[EUR][1000 genomes]
rs72773533	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72773547	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72773549	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72773573	0.81[ASN][1000 genomes]
rs72773592	0.90[ASN][1000 genomes]
rs73136312	0.81[EUR][1000 genomes]
rs7446179	0.85[EUR][1000 genomes]
rs755900	0.86[EUR][1000 genomes]
rs7714195	0.81[EUR][1000 genomes]
rs7718956	0.81[EUR][1000 genomes]
rs7735473	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7735659	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7737187	0.81[ASN][1000 genomes]
rs7737366	0.81[ASN][1000 genomes]
rs880264	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9791082	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9918142	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94048600-94071600	Weak transcription	Lung	lung
2	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
4	chr5:94049800-94077600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94050600-94069000	Weak transcription	Hela-S3	cervix
6	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94067000-94070600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94067000-94080600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94067800-94069200	Strong transcription	Fetal Thymus	thymus

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