The 2.0 version of rSNPBase

Variant report

Variant rs17083888
Chromosome Location chr5:94007823-94007824
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:93955800-94027600 Weak transcription NH-A brain
2 chr5:93969400-94008400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr5:93975600-94012000 Weak transcription Aorta Aorta
4 chr5:93976800-94025000 Weak transcription Rectal Smooth Muscle rectum
5 chr5:93981000-94012000 Weak transcription Left Ventricle heart
6 chr5:93990600-94008200 Weak transcription Colon Smooth Muscle Colon
7 chr5:93991200-94049000 Weak transcription H1 Cell Line embryonic stem cell
8 chr5:93994200-94010200 Weak transcription NHEK skin
9 chr5:93994200-94012000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr5:93994200-94030800 Weak transcription Right Ventricle heart
11 chr5:93994200-94047200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr5:93994400-94012000 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr5:93994400-94022600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr5:93994400-94025400 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr5:93994400-94027600 Weak transcription Liver Liver
16 chr5:93994400-94027600 Weak transcription NHDF-Ad bronchial
17 chr5:93994400-94029000 Weak transcription Brain Hippocampus Middle brain
18 chr5:93994400-94048800 Weak transcription Small Intestine intestine
19 chr5:93994600-94026600 Weak transcription Fetal Kidney kidney
20 chr5:93994600-94029200 Weak transcription Brain Anterior Caudate brain
21 chr5:93994600-94032200 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr5:93995400-94012000 Weak transcription HepG2 liver
23 chr5:93995400-94024800 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr5:93995600-94009600 Weak transcription Fetal Brain Female brain
25 chr5:93995600-94024400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr5:93995600-94033000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr5:93995600-94050400 Weak transcription Esophagus oesophagus
28 chr5:93995800-94010600 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr5:93995800-94012000 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr5:93995800-94012000 Weak transcription HSMM muscle
31 chr5:93996000-94024000 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr5:93996000-94027600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr5:93996000-94036000 Weak transcription GM12878-XiMat blood
34 chr5:93996200-94026600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr5:93996200-94029800 Weak transcription Ovary ovary
36 chr5:93996400-94008000 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr5:93996400-94012000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr5:93996600-94012000 Weak transcription Fetal Muscle Trunk muscle
39 chr5:93996600-94019200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr5:93996600-94023000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr5:93996600-94027800 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr5:93996600-94048400 Weak transcription Lung lung
43 chr5:93996800-94013800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr5:93996800-94036200 Weak transcription Gastric stomach
45 chr5:93997000-94008000 Strong transcription Hela-S3 cervix
46 chr5:93997000-94012000 Weak transcription Spleen Spleen
47 chr5:93997000-94033800 Weak transcription Placenta Placenta
48 chr5:93997400-94012000 Weak transcription Pancreas Pancrea
49 chr5:93997600-94010400 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr5:94000600-94008000 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015