Variant report

Variant	rs72790807
Chromosome Location	chr16:64860151-64860152
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17410049	0.83[EUR][1000 genomes]
rs17410111	0.83[EUR][1000 genomes]
rs17487617	0.84[EUR][1000 genomes]
rs17487665	0.84[EUR][1000 genomes]
rs17495513	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs231122	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62040425	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62041811	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62041812	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62044496	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62044497	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62044499	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7191507	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72788800	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572899	chr16:64814244-64870659	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	esv3344430	chr16:64860113-64860368	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64859400-64862200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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