Variant report

Variant	rs17487665
Chromosome Location	chr16:64807455-64807456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1024480	1.00[ASN][1000 genomes]
rs10459802	1.00[ASN][1000 genomes]
rs11075548	1.00[ASN][1000 genomes]
rs121676	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs142058	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs1423993	1.00[ASN][1000 genomes]
rs17410049	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17410111	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495513	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189130	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107371	1.00[ASN][1000 genomes]
rs2107372	1.00[ASN][1000 genomes]
rs2214541	1.00[ASN][1000 genomes]
rs231038	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231056	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231057	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231063	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231064	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231065	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231067	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231068	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231071	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231072	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231075	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231079	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231080	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231081	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231082	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231083	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231085	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231086	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231087	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231088	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231090	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231092	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231093	0.88[EUR][1000 genomes]
rs231094	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231095	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231096	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231098	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231099	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231100	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231101	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231102	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231103	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231105	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231107	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231108	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231109	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231110	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231117	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231120	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231122	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373148	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428500	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4967865	1.00[ASN][1000 genomes]
rs57941915	1.00[ASN][1000 genomes]
rs62040425	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62041811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62041812	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044496	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044497	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044499	0.84[EUR][1000 genomes]
rs7184774	1.00[ASN][1000 genomes]
rs7191507	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788800	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790807	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17487665	RRAD	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64805800-64807800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr16:64806000-64807600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr16:64807400-64808200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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