Variant report

Variant	rs17410049
Chromosome Location	chr16:64825766-64825767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1024480	1.00[ASN][1000 genomes]
rs10459802	1.00[ASN][1000 genomes]
rs11075548	1.00[ASN][1000 genomes]
rs121676	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs142058	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs1423993	1.00[ASN][1000 genomes]
rs17410111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487617	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487665	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495513	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189130	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107371	1.00[ASN][1000 genomes]
rs2107372	1.00[ASN][1000 genomes]
rs2214541	1.00[ASN][1000 genomes]
rs231038	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231056	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231057	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231063	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231064	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231065	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231067	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231068	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231071	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231072	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231075	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231079	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231080	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231081	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231082	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231083	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231085	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231086	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231087	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231088	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231090	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231092	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231093	0.88[EUR][1000 genomes]
rs231094	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231095	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231096	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231098	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231099	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231100	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231101	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231102	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231105	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231107	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231109	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231110	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231117	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231120	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231122	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373148	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428500	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4967865	1.00[ASN][1000 genomes]
rs57941915	1.00[ASN][1000 genomes]
rs62040425	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62041811	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62041812	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044496	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044497	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044499	0.84[EUR][1000 genomes]
rs7184774	1.00[ASN][1000 genomes]
rs7191507	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788800	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790807	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572899	chr16:64814244-64870659	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17410049	RRAD	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64825200-64826400	Enhancers	Osteobl	bone
2	chr16:64825400-64826400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:64825400-64826800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr16:64825600-64826400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links