Variant report

Variant	rs72788800
Chromosome Location	chr16:64841188-64841189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1024480	1.00[ASN][1000 genomes]
rs10459802	1.00[ASN][1000 genomes]
rs11075548	1.00[ASN][1000 genomes]
rs121676	1.00[ASN][1000 genomes]
rs142058	1.00[ASN][1000 genomes]
rs1423993	1.00[ASN][1000 genomes]
rs17410049	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17410111	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487617	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487665	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495513	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189130	1.00[ASN][1000 genomes]
rs2107371	1.00[ASN][1000 genomes]
rs2107372	1.00[ASN][1000 genomes]
rs2214541	1.00[ASN][1000 genomes]
rs231038	1.00[ASN][1000 genomes]
rs231056	1.00[ASN][1000 genomes]
rs231057	1.00[ASN][1000 genomes]
rs231058	1.00[ASN][1000 genomes]
rs231059	1.00[ASN][1000 genomes]
rs231060	1.00[ASN][1000 genomes]
rs231062	1.00[ASN][1000 genomes]
rs231063	1.00[ASN][1000 genomes]
rs231064	1.00[ASN][1000 genomes]
rs231065	1.00[ASN][1000 genomes]
rs231066	1.00[ASN][1000 genomes]
rs231067	1.00[ASN][1000 genomes]
rs231068	1.00[ASN][1000 genomes]
rs231070	1.00[ASN][1000 genomes]
rs231071	1.00[ASN][1000 genomes]
rs231072	1.00[ASN][1000 genomes]
rs231073	1.00[ASN][1000 genomes]
rs231074	1.00[ASN][1000 genomes]
rs231075	1.00[ASN][1000 genomes]
rs231079	1.00[ASN][1000 genomes]
rs231080	1.00[ASN][1000 genomes]
rs231081	1.00[ASN][1000 genomes]
rs231082	1.00[ASN][1000 genomes]
rs231083	1.00[ASN][1000 genomes]
rs231085	1.00[ASN][1000 genomes]
rs231086	1.00[ASN][1000 genomes]
rs231087	1.00[ASN][1000 genomes]
rs231088	1.00[ASN][1000 genomes]
rs231090	1.00[ASN][1000 genomes]
rs231092	1.00[ASN][1000 genomes]
rs231094	1.00[ASN][1000 genomes]
rs231095	1.00[ASN][1000 genomes]
rs231096	1.00[ASN][1000 genomes]
rs231098	1.00[ASN][1000 genomes]
rs231099	1.00[ASN][1000 genomes]
rs231100	1.00[ASN][1000 genomes]
rs231101	1.00[ASN][1000 genomes]
rs231102	1.00[ASN][1000 genomes]
rs231103	1.00[ASN][1000 genomes]
rs231105	1.00[ASN][1000 genomes]
rs231107	1.00[ASN][1000 genomes]
rs231108	1.00[ASN][1000 genomes]
rs231109	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231110	1.00[ASN][1000 genomes]
rs231117	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231120	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231122	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373148	1.00[ASN][1000 genomes]
rs428500	1.00[ASN][1000 genomes]
rs4967865	1.00[ASN][1000 genomes]
rs57941915	1.00[ASN][1000 genomes]
rs62040425	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62041811	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62041812	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044496	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044497	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044499	0.95[EUR][1000 genomes]
rs7184774	1.00[ASN][1000 genomes]
rs7191507	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790807	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572899	chr16:64814244-64870659	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64837200-64842200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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