Variant report

Variant	rs1423993
Chromosome Location	chr16:64887751-64887752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1024480	1.00[ASN][1000 genomes]
rs10459802	1.00[ASN][1000 genomes]
rs11075548	1.00[ASN][1000 genomes]
rs121676	1.00[ASN][1000 genomes]
rs142058	1.00[ASN][1000 genomes]
rs17410049	1.00[ASN][1000 genomes]
rs17410111	1.00[ASN][1000 genomes]
rs17487617	1.00[ASN][1000 genomes]
rs17487665	1.00[ASN][1000 genomes]
rs17495513	1.00[ASN][1000 genomes]
rs189130	1.00[ASN][1000 genomes]
rs2107371	1.00[ASN][1000 genomes]
rs2107372	1.00[ASN][1000 genomes]
rs2214541	1.00[ASN][1000 genomes]
rs231038	1.00[ASN][1000 genomes]
rs231056	1.00[ASN][1000 genomes]
rs231057	1.00[ASN][1000 genomes]
rs231058	1.00[ASN][1000 genomes]
rs231059	1.00[ASN][1000 genomes]
rs231060	1.00[ASN][1000 genomes]
rs231062	1.00[ASN][1000 genomes]
rs231063	1.00[ASN][1000 genomes]
rs231064	1.00[ASN][1000 genomes]
rs231065	1.00[ASN][1000 genomes]
rs231066	1.00[ASN][1000 genomes]
rs231067	1.00[ASN][1000 genomes]
rs231068	1.00[ASN][1000 genomes]
rs231070	1.00[ASN][1000 genomes]
rs231071	1.00[ASN][1000 genomes]
rs231072	1.00[ASN][1000 genomes]
rs231073	1.00[ASN][1000 genomes]
rs231074	1.00[ASN][1000 genomes]
rs231075	1.00[ASN][1000 genomes]
rs231079	1.00[ASN][1000 genomes]
rs231080	1.00[ASN][1000 genomes]
rs231081	1.00[ASN][1000 genomes]
rs231082	1.00[ASN][1000 genomes]
rs231083	1.00[ASN][1000 genomes]
rs231085	1.00[ASN][1000 genomes]
rs231086	1.00[ASN][1000 genomes]
rs231087	1.00[ASN][1000 genomes]
rs231088	1.00[ASN][1000 genomes]
rs231090	1.00[ASN][1000 genomes]
rs231092	1.00[ASN][1000 genomes]
rs231094	1.00[ASN][1000 genomes]
rs231095	1.00[ASN][1000 genomes]
rs231096	1.00[ASN][1000 genomes]
rs231098	1.00[ASN][1000 genomes]
rs231099	1.00[ASN][1000 genomes]
rs231100	1.00[ASN][1000 genomes]
rs231101	1.00[ASN][1000 genomes]
rs231102	1.00[ASN][1000 genomes]
rs231103	1.00[ASN][1000 genomes]
rs231105	1.00[ASN][1000 genomes]
rs231107	1.00[ASN][1000 genomes]
rs231108	1.00[ASN][1000 genomes]
rs231109	1.00[ASN][1000 genomes]
rs231110	1.00[ASN][1000 genomes]
rs231117	1.00[ASN][1000 genomes]
rs231120	1.00[ASN][1000 genomes]
rs231122	1.00[ASN][1000 genomes]
rs373148	1.00[ASN][1000 genomes]
rs428500	1.00[ASN][1000 genomes]
rs4967865	1.00[ASN][1000 genomes]
rs57941915	1.00[ASN][1000 genomes]
rs62040425	1.00[ASN][1000 genomes]
rs62041811	1.00[ASN][1000 genomes]
rs62041812	1.00[ASN][1000 genomes]
rs62044496	1.00[ASN][1000 genomes]
rs62044497	1.00[ASN][1000 genomes]
rs7184774	1.00[ASN][1000 genomes]
rs7191507	1.00[ASN][1000 genomes]
rs72788800	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv457512	chr16:64887354-64935433	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv572900	chr16:64887354-64935433	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64887400-64888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr16:64887600-64888000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:64887600-64888200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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