Variant report

Variant	rs72791380
Chromosome Location	chr10:55366858-55366859
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10762996	0.84[ASN][1000 genomes]
rs12256830	1.00[ASN][1000 genomes]
rs1387655	0.80[ASN][1000 genomes]
rs1387659	0.92[ASN][1000 genomes]
rs1489843	0.92[ASN][1000 genomes]
rs1932011	0.92[ASN][1000 genomes]
rs2891482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs386136	0.89[ASN][1000 genomes]
rs426872	0.89[ASN][1000 genomes]
rs4271302	0.92[ASN][1000 genomes]
rs439136	0.89[ASN][1000 genomes]
rs448075	0.89[ASN][1000 genomes]
rs4935452	0.87[ASN][1000 genomes]
rs56105712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481024	0.92[ASN][1000 genomes]
rs66643903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791375	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791386	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791393	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793106	1.00[ASN][1000 genomes]
rs72793107	1.00[ASN][1000 genomes]
rs72793131	0.89[ASN][1000 genomes]
rs9416285	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757386	chr10:55357136-55531037	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1047468	chr10:55361202-55459392	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv550930	chr10:55365419-55395380	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55360800-55367400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:55361400-55367000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:55362200-55371400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:55365600-55367200	Weak transcription	Fetal Lung	lung
5	chr10:55366000-55371200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:55366400-55368200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:55366600-55368200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:55366800-55367000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:55366800-55368000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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