Variant report

Variant	rs72792204
Chromosome Location	chr10:48630675-48630676
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1869168	0.93[ASN][1000 genomes]
rs3850929	0.93[ASN][1000 genomes]
rs7093427	0.86[ASN][1000 genomes]
rs7096999	0.86[ASN][1000 genomes]
rs7097286	0.93[ASN][1000 genomes]
rs72790355	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72790372	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72792211	0.83[AFR][1000 genomes]
rs786771	0.93[ASN][1000 genomes]
rs786772	0.93[ASN][1000 genomes]
rs786775	0.93[ASN][1000 genomes]
rs786794	1.00[ASN][1000 genomes]
rs786795	1.00[ASN][1000 genomes]
rs7913865	0.93[ASN][1000 genomes]
rs796814	0.96[ASN][1000 genomes]
rs812005	1.00[ASN][1000 genomes]
rs812545	1.00[ASN][1000 genomes]
rs896571	0.93[ASN][1000 genomes]
rs9421763	0.83[ASN][1000 genomes]
rs9422352	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48625800-48649400	Weak transcription	Thymus	Thymus
2	chr10:48627800-48636400	Enhancers	Fetal Lung	lung
3	chr10:48628600-48632800	Enhancers	Fetal Muscle Leg	muscle
4	chr10:48629000-48632600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:48629600-48631400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:48629600-48631600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:48629600-48633800	Weak transcription	Adipose Nuclei	Adipose
8	chr10:48629600-48633800	Weak transcription	Aorta	Aorta
9	chr10:48630200-48634200	Weak transcription	Fetal Stomach	stomach
10	chr10:48630600-48631000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links