Variant report

Variant	rs7097286
Chromosome Location	chr10:48605795-48605796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48595136..48596866-chr10:48604058..48606210,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10888203	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1869168	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869169	0.81[EUR][1000 genomes]
rs3850927	0.80[EUR][1000 genomes]
rs3850928	0.80[EUR][1000 genomes]
rs3850929	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3911249	0.80[EUR][1000 genomes]
rs7093427	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7096999	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72790355	0.86[ASN][1000 genomes]
rs72790372	0.93[ASN][1000 genomes]
rs72792204	0.93[ASN][1000 genomes]
rs786771	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786772	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786775	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786794	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs786795	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7913865	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796814	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs812005	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs812545	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs896571	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421763	0.83[ASN][1000 genomes]
rs9422322	0.80[EUR][1000 genomes]
rs9422335	0.80[EUR][1000 genomes]
rs9422347	0.80[EUR][1000 genomes]
rs9422352	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48603400-48606200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:48603600-48606200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:48603600-48615200	Weak transcription	Spleen	Spleen
4	chr10:48604400-48605800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:48604600-48605800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:48605000-48605800	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:48605600-48608200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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