Variant report

Variant	rs786772
Chromosome Location	chr10:48601573-48601574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1869168	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850929	0.93[ASN][1000 genomes]
rs7093427	0.86[ASN][1000 genomes]
rs7096999	0.86[ASN][1000 genomes]
rs7097286	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790355	0.86[ASN][1000 genomes]
rs72790372	0.93[ASN][1000 genomes]
rs72792204	0.93[ASN][1000 genomes]
rs786771	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786775	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786794	0.93[ASN][1000 genomes]
rs786795	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7913865	1.00[ASN][1000 genomes]
rs796814	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs812005	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs812545	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs896571	1.00[ASN][1000 genomes]
rs9421763	0.83[ASN][1000 genomes]
rs9422352	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48595000-48604800	Weak transcription	Thymus	Thymus
2	chr10:48595800-48603200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:48598800-48603000	Weak transcription	Spleen	Spleen
4	chr10:48599800-48602600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:48599800-48603400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:48600800-48602000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:48600800-48602400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:48601000-48602400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:48601000-48603400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:48601000-48603800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:48601200-48602200	Enhancers	NHDF-Ad	bronchial
12	chr10:48601200-48602400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:48601200-48602400	Flanking Active TSS	Osteobl	bone
14	chr10:48601200-48602800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:48601200-48603000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:48601200-48603600	Enhancers	HMEC	breast
17	chr10:48601400-48601600	Flanking Active TSS	NHLF	lung
18	chr10:48601400-48601800	Active TSS	NH-A	brain
19	chr10:48601400-48602000	Enhancers	NHEK	skin
20	chr10:48601400-48602200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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