Variant report

Variant	rs786775
Chromosome Location	chr10:48599203-48599204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48585104..48587866-chr10:48597542..48600033,2	MCF-7	breast:
2	chr10:48574920..48577214-chr10:48596773..48599642,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10888203	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1869168	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869169	0.81[EUR][1000 genomes]
rs3850927	0.80[EUR][1000 genomes]
rs3850928	0.80[EUR][1000 genomes]
rs3850929	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3911249	0.80[EUR][1000 genomes]
rs7093427	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7096999	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7097286	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790355	0.86[ASN][1000 genomes]
rs72790372	0.93[ASN][1000 genomes]
rs72792204	0.93[ASN][1000 genomes]
rs786771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786772	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786794	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs786795	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7913865	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796814	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs812005	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs812545	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs896571	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421763	0.83[ASN][1000 genomes]
rs9422322	0.80[EUR][1000 genomes]
rs9422335	0.80[EUR][1000 genomes]
rs9422347	0.80[EUR][1000 genomes]
rs9422352	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48593600-48599800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:48595000-48604800	Weak transcription	Thymus	Thymus
3	chr10:48595800-48603200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:48597600-48599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:48598800-48599800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:48598800-48599800	Weak transcription	NH-A	brain
7	chr10:48598800-48600000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:48598800-48600000	Weak transcription	Osteobl	bone
9	chr10:48598800-48603000	Weak transcription	Spleen	Spleen
10	chr10:48599000-48599400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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