Variant report

Variant	rs9422335
Chromosome Location	chr10:48573624-48573625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48573259..48576256-chr10:48576994..48579438,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10888203	0.85[EUR][1000 genomes]
rs1869168	0.80[EUR][1000 genomes]
rs1869169	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3850927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850928	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850929	0.86[EUR][1000 genomes]
rs3911249	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093427	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7096999	0.86[EUR][1000 genomes]
rs7097286	0.80[EUR][1000 genomes]
rs786771	0.80[EUR][1000 genomes]
rs786775	0.80[EUR][1000 genomes]
rs786795	0.80[EUR][1000 genomes]
rs7913865	0.83[EUR][1000 genomes]
rs796814	0.80[EUR][1000 genomes]
rs812005	0.80[EUR][1000 genomes]
rs896571	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9421763	0.91[EUR][1000 genomes]
rs9422322	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9422347	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9422352	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9422335	SYT15	cis	parietal	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48571200-48574400	Enhancers	NH-A	brain
2	chr10:48571400-48574800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr10:48572000-48574000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:48572000-48574000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:48572200-48574400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr10:48572200-48575000	Enhancers	NHLF	lung
7	chr10:48572600-48573800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:48572600-48574000	Enhancers	Spleen	Spleen
9	chr10:48572600-48574800	Enhancers	Lung	lung
10	chr10:48572800-48573800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:48572800-48573800	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr10:48572800-48573800	Flanking Active TSS	NHDF-Ad	bronchial
13	chr10:48572800-48573800	Flanking Active TSS	Osteobl	bone
14	chr10:48572800-48574000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr10:48572800-48574200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr10:48572800-48575000	Enhancers	HMEC	breast
17	chr10:48573000-48573800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr10:48573000-48573800	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr10:48573000-48573800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:48573000-48573800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:48573000-48573800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:48573000-48573800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:48573000-48573800	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr10:48573000-48573800	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr10:48573000-48573800	Bivalent Enhancer	Fetal Intestine Large	intestine
26	chr10:48573000-48573800	Flanking Active TSS	Placenta	Placenta
27	chr10:48573000-48573800	Flanking Active TSS	Fetal Thymus	thymus
28	chr10:48573000-48574000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr10:48573000-48574000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr10:48573000-48574000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr10:48573000-48574000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:48573000-48574000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:48573000-48574200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr10:48573000-48574200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:48573000-48574400	Enhancers	Stomach Mucosa	stomach
36	chr10:48573000-48575200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:48573200-48573800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr10:48573200-48573800	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr10:48573200-48573800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:48573200-48573800	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr10:48573200-48573800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr10:48573200-48573800	Active TSS	Colonic Mucosa	Colon
43	chr10:48573200-48573800	Flanking Active TSS	Esophagus	oesophagus
44	chr10:48573200-48573800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
45	chr10:48573200-48573800	Flanking Active TSS	Fetal Lung	lung
46	chr10:48573200-48573800	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr10:48573200-48574000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr10:48573200-48574000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:48573200-48574000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:48573200-48574000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links