Variant report

Variant	rs72849090
Chromosome Location	chr6:37101529-37101530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37069809..37073180-chr6:37101170..37104967,5	MCF-7	breast:
2	chr6:37023016..37028102-chr6:37100867..37105079,9	MCF-7	breast:
3	chr6:37101186..37103184-chr6:37137882..37139452,2	K562	blood:
4	chr6:37098264..37100378-chr6:37100579..37103118,2	K562	blood:
5	chr6:37071011..37072656-chr6:37100071..37101969,2	MCF-7	breast:
6	chr6:37100437..37107412-chr6:37134497..37140712,18	MCF-7	breast:
7	chr6:37101448..37105866-chr6:37106626..37109190,5	MCF-7	breast:
8	chr6:37100909..37108375-chr6:37132663..37140432,15	MCF-7	breast:
9	chr6:37022707..37025816-chr6:37101258..37104002,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10498737	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947658	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947659	0.83[EUR][1000 genomes]
rs11961047	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196469	0.82[EUR][1000 genomes]
rs12210148	0.88[EUR][1000 genomes]
rs2395668	0.88[EUR][1000 genomes]
rs56410799	1.00[ASN][1000 genomes]
rs9462263	0.90[EUR][1000 genomes]
rs9462264	0.91[EUR][1000 genomes]
rs9462265	0.87[EUR][1000 genomes]
rs9470488	0.91[EUR][1000 genomes]
rs9470491	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37092800-37102000	Weak transcription	Pancreas	Pancrea
2	chr6:37096800-37104800	Weak transcription	Right Ventricle	heart
3	chr6:37098600-37104600	Weak transcription	GM12878-XiMat	blood
4	chr6:37099400-37101800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:37099400-37101800	Weak transcription	Gastric	stomach
6	chr6:37099400-37102000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:37099600-37101600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:37099600-37101600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:37099600-37101800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:37099600-37101800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:37099600-37101800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:37099600-37101800	Weak transcription	Esophagus	oesophagus
13	chr6:37099600-37101800	Weak transcription	Fetal Brain Female	brain
14	chr6:37099600-37102000	Weak transcription	Liver	Liver
15	chr6:37099600-37102200	Weak transcription	Brain Germinal Matrix	brain
16	chr6:37099600-37102400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:37099600-37102400	Weak transcription	Brain Angular Gyrus	brain
18	chr6:37099600-37103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:37099600-37105200	Weak transcription	Ovary	ovary
20	chr6:37099800-37101600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:37099800-37101600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:37099800-37101600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:37099800-37101600	Weak transcription	Adipose Nuclei	Adipose
24	chr6:37099800-37101600	Weak transcription	Colonic Mucosa	Colon
25	chr6:37099800-37101600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:37099800-37101600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:37099800-37101600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:37099800-37101600	Weak transcription	NHEK	skin
29	chr6:37099800-37101600	Weak transcription	NHLF	lung
30	chr6:37099800-37101600	Weak transcription	Osteobl	bone
31	chr6:37099800-37101800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:37099800-37101800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:37099800-37101800	Weak transcription	Lung	lung
34	chr6:37099800-37101800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:37099800-37101800	Weak transcription	Spleen	Spleen
36	chr6:37099800-37102000	Weak transcription	Psoas Muscle	Psoas
37	chr6:37099800-37102000	Weak transcription	Right Atrium	heart
38	chr6:37099800-37102000	Weak transcription	Small Intestine	intestine
39	chr6:37099800-37102200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:37099800-37102200	Weak transcription	Left Ventricle	heart
41	chr6:37099800-37102400	Weak transcription	Brain Anterior Caudate	brain
42	chr6:37099800-37102400	Weak transcription	Fetal Lung	lung
43	chr6:37099800-37102600	Weak transcription	Fetal Kidney	kidney
44	chr6:37100000-37101600	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:37100000-37101600	Weak transcription	Fetal Intestine Small	intestine
46	chr6:37100000-37101600	Weak transcription	HMEC	breast
47	chr6:37100000-37101600	Weak transcription	HSMM	muscle
48	chr6:37100000-37101600	Weak transcription	HSMMtube	muscle
49	chr6:37100000-37101800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:37100000-37101800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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