Variant report

Variant	rs9470491
Chromosome Location	chr6:37101853-37101854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37069809..37073180-chr6:37101170..37104967,5	MCF-7	breast:
2	chr6:37023016..37028102-chr6:37100867..37105079,9	MCF-7	breast:
3	chr6:37101186..37103184-chr6:37137882..37139452,2	K562	blood:
4	chr6:37098264..37100378-chr6:37100579..37103118,2	K562	blood:
5	chr6:37071011..37072656-chr6:37100071..37101969,2	MCF-7	breast:
6	chr6:37100437..37107412-chr6:37134497..37140712,18	MCF-7	breast:
7	chr6:37101448..37105866-chr6:37106626..37109190,5	MCF-7	breast:
8	chr6:37100909..37108375-chr6:37132663..37140432,15	MCF-7	breast:
9	chr6:37022707..37025816-chr6:37101258..37104002,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10498737	0.93[EUR][1000 genomes]
rs10947658	0.93[EUR][1000 genomes]
rs10947659	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11961047	0.93[EUR][1000 genomes]
rs12196469	0.85[EUR][1000 genomes]
rs12208423	0.94[ASN][1000 genomes]
rs12208425	1.00[ASN][1000 genomes]
rs12210148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224288	0.87[ASN][1000 genomes]
rs2395668	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918039	0.87[ASN][1000 genomes]
rs72849090	0.90[EUR][1000 genomes]
rs7757939	0.81[ASN][1000 genomes]
rs9462263	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462264	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462265	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470488	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470505	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37092800-37102000	Weak transcription	Pancreas	Pancrea
2	chr6:37096800-37104800	Weak transcription	Right Ventricle	heart
3	chr6:37098600-37104600	Weak transcription	GM12878-XiMat	blood
4	chr6:37099400-37102000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:37099600-37102000	Weak transcription	Liver	Liver
6	chr6:37099600-37102200	Weak transcription	Brain Germinal Matrix	brain
7	chr6:37099600-37102400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37099600-37102400	Weak transcription	Brain Angular Gyrus	brain
9	chr6:37099600-37103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:37099600-37105200	Weak transcription	Ovary	ovary
11	chr6:37099800-37102000	Weak transcription	Psoas Muscle	Psoas
12	chr6:37099800-37102000	Weak transcription	Right Atrium	heart
13	chr6:37099800-37102000	Weak transcription	Small Intestine	intestine
14	chr6:37099800-37102200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:37099800-37102200	Weak transcription	Left Ventricle	heart
16	chr6:37099800-37102400	Weak transcription	Brain Anterior Caudate	brain
17	chr6:37099800-37102400	Weak transcription	Fetal Lung	lung
18	chr6:37099800-37102600	Weak transcription	Fetal Kidney	kidney
19	chr6:37100000-37102000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:37100000-37102000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:37100000-37102000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37100000-37102000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:37100000-37102000	Weak transcription	Fetal Intestine Large	intestine
24	chr6:37100000-37104800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:37100000-37104800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:37100200-37102000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:37100200-37102400	Weak transcription	K562	blood
28	chr6:37100600-37102000	Weak transcription	HepG2	liver
29	chr6:37100600-37102200	Weak transcription	Fetal Heart	heart
30	chr6:37101400-37102000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:37101400-37102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:37101400-37102000	Enhancers	NH-A	brain
33	chr6:37101400-37102200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:37101400-37102400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:37101400-37102400	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:37101400-37103000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:37101400-37103000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:37101400-37103000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:37101400-37103000	Enhancers	Fetal Muscle Leg	muscle
40	chr6:37101400-37103200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:37101400-37103400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:37101400-37103600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:37101400-37104000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:37101400-37104000	Enhancers	Placenta	Placenta
45	chr6:37101400-37104200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:37101400-37104800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:37101400-37106000	Enhancers	Stomach Mucosa	stomach
48	chr6:37101400-37106200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:37101400-37106400	Enhancers	NHDF-Ad	bronchial
50	chr6:37101400-37108200	Enhancers	Fetal Stomach	stomach

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