Variant report

Variant	rs12210148
Chromosome Location	chr6:37104753-37104754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37069809..37073180-chr6:37101170..37104967,5	MCF-7	breast:
2	chr6:37023016..37028102-chr6:37100867..37105079,9	MCF-7	breast:
3	chr6:37103418..37107139-chr6:37107617..37110665,3	K562	blood:
4	chr6:37096514..37098920-chr6:37104351..37107169,3	K562	blood:
5	chr6:37097945..37100004-chr6:37103434..37105888,2	MCF-7	breast:
6	chr6:37069334..37071382-chr6:37103565..37107172,5	MCF-7	breast:
7	chr6:37100437..37107412-chr6:37134497..37140712,18	MCF-7	breast:
8	chr6:37101448..37105866-chr6:37106626..37109190,5	MCF-7	breast:
9	chr6:37100909..37108375-chr6:37132663..37140432,15	MCF-7	breast:
10	chr6:37103433..37108249-chr6:37120409..37124789,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498737	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10947658	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs10947659	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11961047	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs12196469	0.83[EUR][1000 genomes]
rs12199978	1.00[JPT][hapmap]
rs12208423	0.94[ASN][1000 genomes]
rs12208425	1.00[ASN][1000 genomes]
rs1224288	0.87[ASN][1000 genomes]
rs16889362	1.00[JPT][hapmap]
rs16889370	1.00[JPT][hapmap]
rs2395668	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918039	0.87[ASN][1000 genomes]
rs72849090	0.88[EUR][1000 genomes]
rs7757939	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9462263	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462264	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462265	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470449	1.00[CHB][hapmap]
rs9470488	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470491	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470493	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9470505	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12210148	TREML2	cis	cerebellum	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37096800-37104800	Weak transcription	Right Ventricle	heart
2	chr6:37099600-37105200	Weak transcription	Ovary	ovary
3	chr6:37100000-37104800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:37100000-37104800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:37101400-37104800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:37101400-37106000	Enhancers	Stomach Mucosa	stomach
7	chr6:37101400-37106200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:37101400-37106400	Enhancers	NHDF-Ad	bronchial
9	chr6:37101400-37108200	Enhancers	Fetal Stomach	stomach
10	chr6:37101600-37104800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:37101600-37104800	Enhancers	Fetal Intestine Small	intestine
12	chr6:37101600-37104800	Enhancers	NHLF	lung
13	chr6:37101600-37105000	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:37101600-37105200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:37101600-37106200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:37101600-37106200	Enhancers	HMEC	breast
17	chr6:37101800-37104800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:37101800-37105400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:37102000-37104800	Enhancers	Liver	Liver
20	chr6:37102000-37105000	Enhancers	Fetal Intestine Large	intestine
21	chr6:37102400-37104800	Weak transcription	Aorta	Aorta
22	chr6:37102600-37104800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:37102800-37105000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:37102800-37105000	Weak transcription	Brain Anterior Caudate	brain
25	chr6:37102800-37105400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:37103000-37104800	Weak transcription	Right Atrium	heart
27	chr6:37103000-37105000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:37103000-37105000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:37103000-37105000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:37103000-37105000	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:37103000-37105000	Enhancers	HUVEC	blood vessel
32	chr6:37103000-37105000	Weak transcription	K562	blood
33	chr6:37103000-37105000	Enhancers	Osteobl	bone
34	chr6:37103000-37105200	Weak transcription	Psoas Muscle	Psoas
35	chr6:37103000-37105800	Weak transcription	Esophagus	oesophagus
36	chr6:37103000-37106000	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:37103000-37106200	Enhancers	HSMM	muscle
38	chr6:37103000-37106800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:37103000-37106800	Enhancers	NHEK	skin
40	chr6:37103200-37105000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:37103200-37105000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:37103200-37105200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:37103200-37106000	Active TSS	H1 Cell Line	embryonic stem cell
44	chr6:37103200-37106000	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr6:37103200-37106000	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:37103200-37106000	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr6:37103200-37109200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:37103400-37104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:37103400-37104800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:37103400-37104800	Weak transcription	Fetal Heart	heart

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