Variant report

Variant	rs2395668
Chromosome Location	chr6:37105893-37105894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37105880..37107454-chr6:37108866..37110406,2	MCF-7	breast:
2	chr6:37094490..37097324-chr6:37105749..37107253,2	MCF-7	breast:
3	chr6:37073648..37076297-chr6:37105144..37107606,2	MCF-7	breast:
4	chr6:37103418..37107139-chr6:37107617..37110665,3	K562	blood:
5	chr6:37096514..37098920-chr6:37104351..37107169,3	K562	blood:
6	chr6:37104897..37107687-chr6:37150171..37152917,2	K562	blood:
7	chr6:37105482..37108115-chr6:37135439..37137000,2	K562	blood:
8	chr6:37105362..37108105-chr6:37116241..37117919,2	K562	blood:
9	chr6:37069334..37071382-chr6:37103565..37107172,5	MCF-7	breast:
10	chr6:37100437..37107412-chr6:37134497..37140712,18	MCF-7	breast:
11	chr6:37100909..37108375-chr6:37132663..37140432,15	MCF-7	breast:
12	chr6:37103433..37108249-chr6:37120409..37124789,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252687	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs10947658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs10947659	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11961047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs12196469	0.81[EUR][1000 genomes]
rs12199978	1.00[JPT][hapmap]
rs12208423	0.94[ASN][1000 genomes]
rs12208425	1.00[ASN][1000 genomes]
rs12210148	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224288	0.87[ASN][1000 genomes]
rs16889362	1.00[JPT][hapmap]
rs16889370	1.00[JPT][hapmap]
rs6918039	0.87[ASN][1000 genomes]
rs72849090	0.88[EUR][1000 genomes]
rs7757939	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9462263	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462264	0.94[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462265	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470449	1.00[CHB][hapmap]
rs9470488	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470491	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470493	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9470505	0.87[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37101400-37106000	Enhancers	Stomach Mucosa	stomach
2	chr6:37101400-37106200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:37101400-37106400	Enhancers	NHDF-Ad	bronchial
4	chr6:37101400-37108200	Enhancers	Fetal Stomach	stomach
5	chr6:37101600-37106200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:37101600-37106200	Enhancers	HMEC	breast
7	chr6:37103000-37106000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:37103000-37106200	Enhancers	HSMM	muscle
9	chr6:37103000-37106800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:37103000-37106800	Enhancers	NHEK	skin
11	chr6:37103200-37106000	Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:37103200-37106000	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:37103200-37106000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:37103200-37106000	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:37103200-37109200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:37103400-37106000	Active TSS	H9 Cell Line	embryonic stem cell
17	chr6:37103600-37106000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:37103600-37115800	Weak transcription	Small Intestine	intestine
19	chr6:37103800-37106600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:37104200-37106000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:37104200-37106200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:37104200-37107200	Enhancers	Colon Smooth Muscle	Colon
23	chr6:37104400-37106000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:37104400-37106000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:37104400-37106200	Enhancers	Fetal Lung	lung
26	chr6:37104600-37106000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:37104600-37106200	Enhancers	Fetal Muscle Leg	muscle
28	chr6:37104600-37106200	Flanking Active TSS	Hela-S3	cervix
29	chr6:37104600-37106200	Enhancers	HSMMtube	muscle
30	chr6:37104800-37106200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:37104800-37106200	Enhancers	Fetal Heart	heart
32	chr6:37105000-37106000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:37105000-37106200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:37105000-37106200	Flanking Active TSS	HUVEC	blood vessel
35	chr6:37105000-37106200	Flanking Active TSS	Osteobl	bone
36	chr6:37105000-37107600	Enhancers	K562	blood
37	chr6:37105200-37106400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:37105200-37107400	Enhancers	NHLF	lung
39	chr6:37105200-37109800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr6:37105400-37106000	Enhancers	Fetal Brain Male	brain
41	chr6:37105400-37106200	Enhancers	Rectal Smooth Muscle	rectum
42	chr6:37105400-37106600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:37105400-37107400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:37105400-37109400	Weak transcription	Right Atrium	heart
45	chr6:37105400-37113800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:37105400-37116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:37105600-37106000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:37105600-37106000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:37105600-37106000	Weak transcription	Adipose Nuclei	Adipose
50	chr6:37105600-37106000	Flanking Active TSS	Placenta	Placenta

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