Variant report

Variant	rs10947659
Chromosome Location	chr6:37109685-37109686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37103418..37107139-chr6:37107617..37110665,3	K562	blood:
2	chr6:37107727..37109747-chr6:37115455..37117904,2	K562	blood:
3	chr6:37105880..37107454-chr6:37108866..37110406,2	MCF-7	breast:
4	chr6:37079767..37081721-chr6:37108922..37110809,2	K562	blood:
5	chr6:37070506..37072299-chr6:37108900..37111615,2	K562	blood:
6	chr6:37109445..37112663-chr6:37137291..37140182,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10498737	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs10947658	0.86[ASW][hapmap];1.00[CEU][hapmap];0.85[MEX][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs1150791	1.00[CHD][hapmap]
rs11961047	0.86[ASW][hapmap];1.00[CEU][hapmap];0.85[MEX][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs12199978	1.00[JPT][hapmap]
rs12208423	0.88[ASN][1000 genomes]
rs12208425	0.94[ASN][1000 genomes]
rs12210148	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1224288	0.93[ASN][1000 genomes]
rs16889362	1.00[JPT][hapmap]
rs16889370	1.00[JPT][hapmap]
rs2395668	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918039	0.93[ASN][1000 genomes]
rs72849090	0.83[EUR][1000 genomes]
rs7757939	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9462263	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462264	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462265	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470488	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470491	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470493	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs9470505	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10947659	TREML2	cis	cerebellum	SCAN

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37103600-37115800	Weak transcription	Small Intestine	intestine
2	chr6:37105200-37109800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:37105400-37113800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:37105400-37116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:37105600-37113200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:37105800-37109800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:37105800-37110000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:37105800-37110200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:37105800-37110400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:37105800-37116200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:37106000-37110000	Weak transcription	Stomach Mucosa	stomach
12	chr6:37106000-37111200	Enhancers	Placenta	Placenta
13	chr6:37106000-37116200	Weak transcription	Esophagus	oesophagus
14	chr6:37106200-37110600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37106200-37110800	Enhancers	A549	lung
16	chr6:37106200-37112200	Weak transcription	Fetal Lung	lung
17	chr6:37106200-37116200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:37106400-37111800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:37106600-37110800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:37106800-37110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:37107400-37110000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:37107400-37112200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:37108000-37110600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:37108400-37110400	Enhancers	Fetal Intestine Small	intestine
25	chr6:37108600-37110400	Enhancers	Adipose Nuclei	Adipose
26	chr6:37108600-37110400	Enhancers	HSMMtube	muscle
27	chr6:37108800-37109800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:37108800-37109800	Enhancers	Stomach Smooth Muscle	stomach
29	chr6:37108800-37110000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr6:37108800-37110400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:37108800-37110400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:37108800-37110400	Enhancers	Brain Germinal Matrix	brain
33	chr6:37108800-37110400	Enhancers	Fetal Brain Male	brain
34	chr6:37108800-37110400	Enhancers	Fetal Intestine Large	intestine
35	chr6:37108800-37110400	Enhancers	Fetal Muscle Leg	muscle
36	chr6:37108800-37110400	Enhancers	Placenta Amnion	Placenta Amnion
37	chr6:37108800-37110400	Enhancers	NH-A	brain
38	chr6:37108800-37110400	Enhancers	Osteobl	bone
39	chr6:37108800-37110600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:37108800-37110600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:37108800-37110600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:37108800-37112200	Enhancers	HepG2	liver
43	chr6:37109000-37109800	Active TSS	H1 Cell Line	embryonic stem cell
44	chr6:37109000-37109800	Active TSS	H9 Cell Line	embryonic stem cell
45	chr6:37109000-37109800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr6:37109000-37110200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:37109000-37110200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:37109000-37110200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr6:37109000-37110200	Enhancers	Hela-S3	cervix
50	chr6:37109000-37110400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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