Variant report

Variant	rs72874926
Chromosome Location	chr3:60661513-60661514
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs60903409	0.87[AFR][1000 genomes]
rs61076572	0.87[AFR][1000 genomes]
rs72872707	0.87[AFR][1000 genomes]
rs72872716	0.87[AFR][1000 genomes]
rs72872718	0.87[AFR][1000 genomes]
rs72872723	0.87[AFR][1000 genomes]
rs72872725	0.87[AFR][1000 genomes]
rs72872728	0.87[AFR][1000 genomes]
rs72872733	0.87[AFR][1000 genomes]
rs72872735	0.87[AFR][1000 genomes]
rs72872756	0.87[AFR][1000 genomes]
rs72872760	0.87[AFR][1000 genomes]
rs72872781	1.00[AFR][1000 genomes]
rs72872800	1.00[AFR][1000 genomes]
rs72874953	0.95[AFR][1000 genomes]
rs72874956	0.95[AFR][1000 genomes]
rs72887661	0.87[AFR][1000 genomes]
rs72887684	0.91[AFR][1000 genomes]
rs72889612	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60658600-60664400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:60661200-60661800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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