Variant report

Variant	rs60903409
Chromosome Location	chr3:60618569-60618570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17063617	0.83[AFR][1000 genomes]
rs61076572	0.91[AFR][1000 genomes]
rs72872707	1.00[AFR][1000 genomes]
rs72872716	1.00[AFR][1000 genomes]
rs72872718	1.00[AFR][1000 genomes]
rs72872723	1.00[AFR][1000 genomes]
rs72872725	1.00[AFR][1000 genomes]
rs72872728	1.00[AFR][1000 genomes]
rs72872733	1.00[AFR][1000 genomes]
rs72872735	1.00[AFR][1000 genomes]
rs72872756	1.00[AFR][1000 genomes]
rs72872760	1.00[AFR][1000 genomes]
rs72872781	0.87[AFR][1000 genomes]
rs72872800	0.87[AFR][1000 genomes]
rs72874926	0.87[AFR][1000 genomes]
rs72874953	0.83[AFR][1000 genomes]
rs72874956	0.83[AFR][1000 genomes]
rs72887661	0.91[AFR][1000 genomes]
rs72887684	0.95[AFR][1000 genomes]
rs72889612	0.95[AFR][1000 genomes]
rs72889630	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60616200-60622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:60617200-60619400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:60617200-60622200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:60617400-60622200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:60617400-60622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:60617400-60622400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:60617400-60624800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:60617600-60618600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:60617600-60622400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:60617800-60624600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:60618000-60618800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:60618200-60618600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:60618200-60622400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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