Variant report
| Variant | rs72889612 |
|---|---|
| Chromosome Location | chr3:60601439-60601440 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240097 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17063617 | 0.87[AFR][1000 genomes] |
| rs60903409 | 0.95[AFR][1000 genomes] |
| rs61076572 | 0.95[AFR][1000 genomes] |
| rs72872707 | 0.95[AFR][1000 genomes] |
| rs72872716 | 0.95[AFR][1000 genomes] |
| rs72872718 | 0.95[AFR][1000 genomes] |
| rs72872723 | 0.95[AFR][1000 genomes] |
| rs72872725 | 0.95[AFR][1000 genomes] |
| rs72872728 | 0.95[AFR][1000 genomes] |
| rs72872733 | 0.95[AFR][1000 genomes] |
| rs72872735 | 0.95[AFR][1000 genomes] |
| rs72872756 | 0.95[AFR][1000 genomes] |
| rs72872760 | 0.95[AFR][1000 genomes] |
| rs72872781 | 0.91[AFR][1000 genomes] |
| rs72872800 | 0.91[AFR][1000 genomes] |
| rs72874926 | 0.91[AFR][1000 genomes] |
| rs72874953 | 0.87[AFR][1000 genomes] |
| rs72874956 | 0.87[AFR][1000 genomes] |
| rs72887661 | 0.95[AFR][1000 genomes] |
| rs72887684 | 1.00[AFR][1000 genomes] |
| rs72889630 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529602 | chr3:60088353-60830769 | Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv998815 | chr3:60495872-60830769 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv999828 | chr3:60537384-60785274 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:60600200-60602800 | Weak transcription | Liver | Liver |
