Variant report

Variant	rs17063617
Chromosome Location	chr3:60586834-60586835
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17063329	1.00[CEU][hapmap]
rs17063494	1.00[CEU][hapmap]
rs17063619	0.87[LWK][hapmap];0.91[YRI][hapmap]
rs17063911	1.00[CEU][hapmap]
rs17063914	1.00[CEU][hapmap]
rs17063916	1.00[CEU][hapmap]
rs17063917	1.00[CEU][hapmap]
rs17063920	1.00[CEU][hapmap]
rs17063921	1.00[CEU][hapmap]
rs17063923	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs60291058	1.00[EUR][1000 genomes]
rs60903409	0.83[AFR][1000 genomes]
rs61076572	0.92[AFR][1000 genomes]
rs72872707	0.83[AFR][1000 genomes]
rs72872716	0.83[AFR][1000 genomes]
rs72872718	0.83[AFR][1000 genomes]
rs72872723	0.83[AFR][1000 genomes]
rs72872725	0.83[AFR][1000 genomes]
rs72872728	0.83[AFR][1000 genomes]
rs72872733	0.83[AFR][1000 genomes]
rs72872735	0.83[AFR][1000 genomes]
rs72872756	0.83[AFR][1000 genomes]
rs72872760	0.83[AFR][1000 genomes]
rs72887661	0.92[AFR][1000 genomes]
rs72887684	0.87[AFR][1000 genomes]
rs72889612	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60580400-60588600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:60585600-60587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:60585800-60588800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:60586600-60587000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:60586600-60587000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:60586600-60587000	Enhancers	Liver	Liver
7	chr3:60586600-60587400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:60586800-60587000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:60586800-60588800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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