Variant report

Variant	rs72872733
Chromosome Location	chr3:60619695-60619696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17063617	0.83[AFR][1000 genomes]
rs60903409	1.00[AFR][1000 genomes]
rs61076572	0.91[AFR][1000 genomes]
rs72872707	1.00[AFR][1000 genomes]
rs72872716	1.00[AFR][1000 genomes]
rs72872718	1.00[AFR][1000 genomes]
rs72872723	1.00[AFR][1000 genomes]
rs72872725	1.00[AFR][1000 genomes]
rs72872728	1.00[AFR][1000 genomes]
rs72872735	1.00[AFR][1000 genomes]
rs72872756	1.00[AFR][1000 genomes]
rs72872760	1.00[AFR][1000 genomes]
rs72872781	0.87[AFR][1000 genomes]
rs72872800	0.87[AFR][1000 genomes]
rs72874926	0.87[AFR][1000 genomes]
rs72874953	0.83[AFR][1000 genomes]
rs72874956	0.83[AFR][1000 genomes]
rs72887661	0.91[AFR][1000 genomes]
rs72887684	0.95[AFR][1000 genomes]
rs72889612	0.95[AFR][1000 genomes]
rs72889630	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60616200-60622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:60617200-60622200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:60617400-60622200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:60617400-60622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:60617400-60622400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:60617400-60624800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:60617600-60622400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:60617800-60624600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:60618200-60622400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:60618800-60619800	Enhancers	Fetal Heart	heart
11	chr3:60618800-60622400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:60618800-60622400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:60619200-60619800	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:60619400-60619800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr3:60619400-60619800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr3:60619600-60619800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:60619600-60619800	Bivalent Enhancer	Osteobl	bone
18	chr3:60619600-60620400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links