Variant report

Variant	rs72910457
Chromosome Location	chr3:86822542-86822543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58205454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58300051	1.00[AMR][1000 genomes]
rs58929789	1.00[AMR][1000 genomes]
rs72908424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910495	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910498	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912386	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914337	1.00[AMR][1000 genomes]
rs72914359	1.00[AMR][1000 genomes]
rs72914380	1.00[AMR][1000 genomes]
rs72914391	1.00[AMR][1000 genomes]
rs72914394	1.00[AMR][1000 genomes]
rs72914401	1.00[AMR][1000 genomes]
rs72916014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86822400-86822600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links