Variant report

Variant	rs72914380
Chromosome Location	chr3:86960219-86960220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58205454	1.00[AMR][1000 genomes]
rs58300051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58929789	1.00[AMR][1000 genomes]
rs72908424	1.00[AMR][1000 genomes]
rs72908438	1.00[AMR][1000 genomes]
rs72910443	1.00[AMR][1000 genomes]
rs72910457	1.00[AMR][1000 genomes]
rs72910476	1.00[AMR][1000 genomes]
rs72910478	1.00[AMR][1000 genomes]
rs72910479	1.00[AMR][1000 genomes]
rs72910480	1.00[AMR][1000 genomes]
rs72910482	1.00[AMR][1000 genomes]
rs72910495	1.00[AMR][1000 genomes]
rs72910498	1.00[AMR][1000 genomes]
rs72912386	1.00[AMR][1000 genomes]
rs72914337	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914394	1.00[AMR][1000 genomes]
rs72914401	1.00[AMR][1000 genomes]
rs72916014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86959800-86960600	Active TSS	Placenta	Placenta
2	chr3:86960200-86963200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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