Variant report

Variant	rs72910482
Chromosome Location	chr3:86837931-86837932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58205454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58300051	1.00[AMR][1000 genomes]
rs58929789	1.00[AMR][1000 genomes]
rs72908424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910495	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910498	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912386	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914337	1.00[AMR][1000 genomes]
rs72914359	1.00[AMR][1000 genomes]
rs72914380	1.00[AMR][1000 genomes]
rs72914391	1.00[AMR][1000 genomes]
rs72914394	1.00[AMR][1000 genomes]
rs72914401	1.00[AMR][1000 genomes]
rs72916014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86832000-86842400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:86834400-86838200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:86835000-86840000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:86835000-86841600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:86835400-86840200	Weak transcription	Fetal Lung	lung
6	chr3:86835600-86841600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:86836000-86838000	Enhancers	NH-A	brain
8	chr3:86836600-86838200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:86836600-86840200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:86836600-86841200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:86836600-86841600	Weak transcription	NHLF	lung
12	chr3:86836600-86864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:86836800-86838600	Weak transcription	Hela-S3	cervix
14	chr3:86836800-86841600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:86836800-86842200	Weak transcription	A549	lung
16	chr3:86837000-86841400	Weak transcription	HSMM	muscle
17	chr3:86837000-86841600	Weak transcription	Osteobl	bone
18	chr3:86837600-86838000	Weak transcription	HSMMtube	muscle

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