Variant report

Variant	rs72910498
Chromosome Location	chr3:86849374-86849375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58205454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58300051	1.00[AMR][1000 genomes]
rs58929789	1.00[AMR][1000 genomes]
rs72908424	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908438	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910443	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910476	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910478	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910479	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910480	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912386	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914337	1.00[AMR][1000 genomes]
rs72914359	1.00[AMR][1000 genomes]
rs72914380	1.00[AMR][1000 genomes]
rs72914391	1.00[AMR][1000 genomes]
rs72914394	1.00[AMR][1000 genomes]
rs72914401	1.00[AMR][1000 genomes]
rs72916014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1008177	chr3:86841615-86905761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	nsv877128	chr3:86845934-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
15	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	esv3463418	chr3:86848142-86855376	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
17	esv3463419	chr3:86848142-86855376	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
18	esv21028	chr3:86848288-86855189	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86836600-86864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:86844000-86849400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:86844600-86849400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:86844600-86849600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:86844600-86850800	Weak transcription	HSMM	muscle
6	chr3:86848200-86850800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:86848400-86849400	Weak transcription	Osteobl	bone
8	chr3:86849000-86852000	Enhancers	NHDF-Ad	bronchial
9	chr3:86849200-86849400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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