Variant report

Variant	rs72914337
Chromosome Location	chr3:86937608-86937609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58205454	1.00[AMR][1000 genomes]
rs58300051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58929789	1.00[AMR][1000 genomes]
rs72908424	1.00[AMR][1000 genomes]
rs72908438	1.00[AMR][1000 genomes]
rs72910443	1.00[AMR][1000 genomes]
rs72910457	1.00[AMR][1000 genomes]
rs72910476	1.00[AMR][1000 genomes]
rs72910478	1.00[AMR][1000 genomes]
rs72910479	1.00[AMR][1000 genomes]
rs72910480	1.00[AMR][1000 genomes]
rs72910482	1.00[AMR][1000 genomes]
rs72910495	1.00[AMR][1000 genomes]
rs72910498	1.00[AMR][1000 genomes]
rs72912386	1.00[AMR][1000 genomes]
rs72914359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914380	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914391	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914394	1.00[AMR][1000 genomes]
rs72914401	1.00[AMR][1000 genomes]
rs72916014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv877128	chr3:86845934-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv877129	chr3:86845934-86964922	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
9	nsv877130	chr3:86875458-86952516	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv877131	chr3:86875458-86961118	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
11	nsv963525	chr3:86920310-86948539	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86919800-86938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:86927800-86939000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:86937200-86937800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:86937600-86939000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:86937600-86939000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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