Variant report

Variant	rs72915510
Chromosome Location	chr1:59299584-59299585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs57500803	0.93[AFR][1000 genomes]
rs59164731	1.00[AFR][1000 genomes]
rs59193866	0.93[AFR][1000 genomes]
rs59558908	0.93[AFR][1000 genomes]
rs60869213	0.93[AFR][1000 genomes]
rs61294750	1.00[AFR][1000 genomes]
rs61659376	0.87[AFR][1000 genomes]
rs72911516	0.86[AFR][1000 genomes]
rs72911526	0.93[AFR][1000 genomes]
rs72911528	0.93[AFR][1000 genomes]
rs72911533	0.93[AFR][1000 genomes]
rs72911535	0.93[AFR][1000 genomes]
rs72911538	0.93[AFR][1000 genomes]
rs72911540	0.93[AFR][1000 genomes]
rs72911542	0.93[AFR][1000 genomes]
rs72911546	0.93[AFR][1000 genomes]
rs72911550	0.93[AFR][1000 genomes]
rs72911559	1.00[AFR][1000 genomes]
rs72913576	1.00[AFR][1000 genomes]
rs72913582	1.00[AFR][1000 genomes]
rs72913585	1.00[AFR][1000 genomes]
rs72913586	1.00[AFR][1000 genomes]
rs72913589	1.00[AFR][1000 genomes]
rs72913594	1.00[AFR][1000 genomes]
rs72913595	1.00[AFR][1000 genomes]
rs72913599	1.00[AFR][1000 genomes]
rs72913601	1.00[AFR][1000 genomes]
rs72915503	1.00[AFR][1000 genomes]
rs72915504	1.00[AFR][1000 genomes]
rs72915505	1.00[AFR][1000 genomes]
rs72915506	1.00[AFR][1000 genomes]
rs72915521	1.00[AFR][1000 genomes]
rs72915522	1.00[AFR][1000 genomes]
rs72915524	1.00[AFR][1000 genomes]
rs72919563	1.00[AFR][1000 genomes]
rs72919564	1.00[AFR][1000 genomes]
rs72919573	1.00[AFR][1000 genomes]
rs72919582	1.00[AFR][1000 genomes]
rs72919585	1.00[AFR][1000 genomes]
rs72919586	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1014087	chr1:59286306-59334393	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59294000-59300400	Weak transcription	Aorta	Aorta
2	chr1:59294000-59301400	Weak transcription	Left Ventricle	heart
3	chr1:59294000-59311000	Weak transcription	Gastric	stomach
4	chr1:59294400-59305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59296400-59302000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:59296600-59304800	Weak transcription	NHLF	lung
7	chr1:59296800-59302000	Weak transcription	NHDF-Ad	bronchial
8	chr1:59296800-59303800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:59296800-59305600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:59298200-59300200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:59298400-59300000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:59298400-59302600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:59299200-59302000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:59299400-59300400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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