The 2.0 version of rSNPBase

Variant report

Variant rs72911538
Chromosome Location chr1:59276881-59276882
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59251400-59279200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:59251800-59277200 Weak transcription Primary T cells fromperipheralblood blood
3 chr1:59251800-59278200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:59253000-59278000 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr1:59254000-59281000 Weak transcription Brain Substantia Nigra brain
6 chr1:59257200-59278000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:59260200-59277800 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:59260600-59278000 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:59263400-59278200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:59265000-59280400 Weak transcription Brain Hippocampus Middle brain
11 chr1:59265400-59278600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:59265400-59279200 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:59268600-59280400 Weak transcription Colon Smooth Muscle Colon
14 chr1:59270200-59280000 Weak transcription Stomach Smooth Muscle stomach
15 chr1:59270600-59279400 Weak transcription Right Ventricle heart
16 chr1:59271000-59279200 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr1:59271600-59277200 Weak transcription Gastric stomach
18 chr1:59272200-59277200 Weak transcription Stomach Mucosa stomach
19 chr1:59272600-59279200 Weak transcription Duodenum Mucosa Duodenum
20 chr1:59273200-59278200 Weak transcription Primary T cells from cord blood blood
21 chr1:59273200-59278200 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:59273200-59278200 Weak transcription Spleen Spleen
23 chr1:59273800-59279600 Enhancers HepG2 liver
24 chr1:59274200-59278400 Weak transcription GM12878-XiMat blood
25 chr1:59274600-59279800 Enhancers HMEC breast
26 chr1:59274600-59280200 Enhancers NHEK skin
27 chr1:59274600-59281400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr1:59274800-59278400 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr1:59274800-59280000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:59274800-59280000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:59275200-59279400 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:59275200-59280600 Weak transcription Fetal Brain Male brain
33 chr1:59275400-59278200 Weak transcription Colonic Mucosa Colon
34 chr1:59275400-59278600 Weak transcription A549 lung
35 chr1:59275400-59278800 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr1:59275400-59279400 Weak transcription Left Ventricle heart
37 chr1:59275400-59279800 Weak transcription Liver Liver
38 chr1:59275400-59280800 Weak transcription Fetal Heart heart
39 chr1:59275600-59277200 Weak transcription Lung lung
40 chr1:59275600-59277400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr1:59275600-59278200 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:59275600-59279000 Weak transcription NH-A brain
43 chr1:59275600-59279200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:59275600-59279400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:59275600-59279400 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:59275600-59279400 Weak transcription Fetal Intestine Small intestine
47 chr1:59275600-59279800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr1:59275600-59280400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr1:59275600-59280400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:59275600-59280400 Weak transcription K562 blood

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Last update: Aug 31, 2015