The 2.0 version of rSNPBase

Variant report

Variant rs72911524
Chromosome Location chr1:59271609-59271610
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59251400-59275000 Weak transcription Ovary ovary
2 chr1:59251400-59279200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:59251800-59277200 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:59251800-59278200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:59253000-59278000 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr1:59254000-59281000 Weak transcription Brain Substantia Nigra brain
7 chr1:59257200-59278000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:59260200-59277800 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr1:59260600-59275200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr1:59260600-59278000 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:59262400-59274600 Weak transcription Placenta Amnion Placenta Amnion
12 chr1:59263400-59278200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:59264800-59275000 Weak transcription Brain Cingulate Gyrus brain
14 chr1:59265000-59280400 Weak transcription Brain Hippocampus Middle brain
15 chr1:59265400-59278600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:59265400-59279200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:59267400-59272200 Enhancers Stomach Mucosa stomach
18 chr1:59268000-59272600 Enhancers Fetal Intestine Large intestine
19 chr1:59268400-59272600 Enhancers Fetal Intestine Small intestine
20 chr1:59268600-59280400 Weak transcription Colon Smooth Muscle Colon
21 chr1:59268800-59274000 Weak transcription Aorta Aorta
22 chr1:59269000-59274600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:59269000-59274600 Weak transcription HMEC breast
24 chr1:59269000-59275000 Weak transcription Pancreas Pancrea
25 chr1:59269400-59274800 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr1:59270000-59272000 Weak transcription Rectal Smooth Muscle rectum
27 chr1:59270000-59272600 Enhancers Duodenum Mucosa Duodenum
28 chr1:59270000-59272600 Enhancers HepG2 liver
29 chr1:59270200-59280000 Weak transcription Stomach Smooth Muscle stomach
30 chr1:59270600-59272200 Enhancers Small Intestine intestine
31 chr1:59270600-59273200 Enhancers Sigmoid Colon Sigmoid Colon
32 chr1:59270600-59276200 Enhancers Primary B cells from peripheral blood blood
33 chr1:59270600-59279400 Weak transcription Right Ventricle heart
34 chr1:59271000-59273000 Weak transcription Lung lung
35 chr1:59271000-59274200 Enhancers Primary B cells from cord blood blood
36 chr1:59271000-59279200 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:59271400-59272000 Active TSS Colonic Mucosa Colon
38 chr1:59271400-59272200 Enhancers Esophagus oesophagus
39 chr1:59271600-59271800 Enhancers Pancreatic Islets Pancreatic Islet
40 chr1:59271600-59271800 Weak transcription Hela-S3 cervix
41 chr1:59271600-59272000 Active TSS Rectal Mucosa Donor 29 rectum
42 chr1:59271600-59272000 Active TSS Rectal Mucosa Donor 31 rectum
43 chr1:59271600-59272000 Enhancers HSMM muscle
44 chr1:59271600-59272400 Flanking Active TSS GM12878-XiMat blood
45 chr1:59271600-59272800 Weak transcription Spleen Spleen
46 chr1:59271600-59273200 Strong transcription Primary T cells from cord blood blood
47 chr1:59271600-59277200 Weak transcription Gastric stomach

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Last update: Aug 31, 2015