The 2.0 version of rSNPBase

Variant report

Variant rs72909646
Chromosome Location chr1:59245264-59245265
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59235000-59245600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr1:59236200-59245600 Weak transcription Fetal Brain Male brain
3 chr1:59239200-59245600 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr1:59239400-59245600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:59239400-59245600 Weak transcription Psoas Muscle Psoas
6 chr1:59239400-59245800 Weak transcription Fetal Brain Female brain
7 chr1:59239800-59245600 Weak transcription Muscle Satellite Cultured Cells --
8 chr1:59239800-59245600 Weak transcription Brain Cingulate Gyrus brain
9 chr1:59239800-59245600 Weak transcription Colon Smooth Muscle Colon
10 chr1:59239800-59245600 Weak transcription Fetal Stomach stomach
11 chr1:59239800-59245600 Weak transcription Right Atrium heart
12 chr1:59239800-59245800 Weak transcription Brain Substantia Nigra brain
13 chr1:59239800-59246600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:59239800-59247200 Weak transcription Esophagus oesophagus
15 chr1:59239800-59247400 Weak transcription Gastric stomach
16 chr1:59240000-59245400 Weak transcription NH-A brain
17 chr1:59240000-59245600 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr1:59240000-59245600 Weak transcription Adipose Nuclei Adipose
19 chr1:59240000-59245600 Weak transcription NHDF-Ad bronchial
20 chr1:59240000-59245800 Weak transcription HSMM muscle
21 chr1:59240200-59245400 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr1:59240200-59245400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:59240200-59245400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:59240200-59245400 Weak transcription Rectal Smooth Muscle rectum
25 chr1:59240200-59245600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:59240200-59245600 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr1:59240400-59245400 Weak transcription HUVEC blood vessel
28 chr1:59240600-59245400 Weak transcription Fetal Heart heart
29 chr1:59240600-59245400 Weak transcription Stomach Mucosa stomach
30 chr1:59240600-59245600 Weak transcription Right Ventricle heart
31 chr1:59240600-59246600 Weak transcription Left Ventricle heart
32 chr1:59240800-59245800 Weak transcription HepG2 liver
33 chr1:59240800-59246600 Weak transcription Pancreas Pancrea
34 chr1:59243200-59247200 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr1:59243600-59245400 Weak transcription NHLF lung
36 chr1:59243800-59245400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:59244600-59245400 Weak transcription NHEK skin
38 chr1:59244800-59245400 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr1:59244800-59245600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:59244800-59245800 Active TSS Breast Myoepithelial Primary Cells Breast
41 chr1:59245200-59245600 Enhancers Fetal Intestine Small intestine
42 chr1:59245200-59245800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:59245200-59247000 Enhancers Hela-S3 cervix
44 chr1:59245200-59251400 Active TSS Aorta Aorta

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Last update: Aug 31, 2015