The 2.0 version of rSNPBase

Variant report

Variant rs72911540
Chromosome Location chr1:59279205-59279206
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59254000-59281000 Weak transcription Brain Substantia Nigra brain
2 chr1:59265000-59280400 Weak transcription Brain Hippocampus Middle brain
3 chr1:59268600-59280400 Weak transcription Colon Smooth Muscle Colon
4 chr1:59270200-59280000 Weak transcription Stomach Smooth Muscle stomach
5 chr1:59270600-59279400 Weak transcription Right Ventricle heart
6 chr1:59273800-59279600 Enhancers HepG2 liver
7 chr1:59274600-59279800 Enhancers HMEC breast
8 chr1:59274600-59280200 Enhancers NHEK skin
9 chr1:59274600-59281400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:59274800-59280000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:59274800-59280000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:59275200-59279400 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr1:59275200-59280600 Weak transcription Fetal Brain Male brain
14 chr1:59275400-59279400 Weak transcription Left Ventricle heart
15 chr1:59275400-59279800 Weak transcription Liver Liver
16 chr1:59275400-59280800 Weak transcription Fetal Heart heart
17 chr1:59275600-59279400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:59275600-59279400 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr1:59275600-59279400 Weak transcription Fetal Intestine Small intestine
20 chr1:59275600-59279800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:59275600-59280400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:59275600-59280400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:59275600-59280400 Weak transcription K562 blood
24 chr1:59275600-59280600 Weak transcription NHDF-Ad bronchial
25 chr1:59275800-59279400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:59275800-59280200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:59276000-59279400 Weak transcription Osteobl bone
28 chr1:59276000-59279800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:59276000-59280400 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:59276000-59280600 Weak transcription HSMM muscle
31 chr1:59276200-59280600 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr1:59277000-59280200 Enhancers Esophagus oesophagus
33 chr1:59277200-59279400 Weak transcription Brain Cingulate Gyrus brain
34 chr1:59277200-59280200 Enhancers Lung lung
35 chr1:59277200-59280600 Enhancers Pancreas Pancrea
36 chr1:59277600-59281200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
37 chr1:59277800-59280000 Enhancers Stomach Mucosa stomach
38 chr1:59277800-59280800 Enhancers Primary T cells fromperipheralblood blood
39 chr1:59277800-59280800 Enhancers Primary T helper naive cells fromperipheralblood blood
40 chr1:59277800-59281000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
41 chr1:59278000-59280000 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr1:59278000-59280200 Enhancers HUVEC blood vessel
43 chr1:59278000-59280600 Enhancers Primary T helper cells fromperipheralblood blood
44 chr1:59278000-59280800 Enhancers Primary B cells from peripheral blood blood
45 chr1:59278000-59280800 Enhancers Primary T helper cells PMA-I stimulated --
46 chr1:59278000-59281000 Enhancers Primary T killer naive cells fromperipheralblood blood
47 chr1:59278200-59279800 Enhancers Colonic Mucosa Colon
48 chr1:59278200-59279800 Enhancers Rectal Mucosa Donor 31 rectum
49 chr1:59278200-59280600 Enhancers Primary B cells from cord blood blood
50 chr1:59278200-59280800 Enhancers Primary T cells from cord blood blood

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Last update: Aug 31, 2015