The 2.0 version of rSNPBase

Variant report

Variant rs57500803
Chromosome Location chr1:59274301-59274302
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59251400-59275000 Weak transcription Ovary ovary
2 chr1:59251400-59279200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:59251800-59277200 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:59251800-59278200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:59253000-59278000 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr1:59254000-59281000 Weak transcription Brain Substantia Nigra brain
7 chr1:59257200-59278000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:59260200-59277800 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr1:59260600-59275200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr1:59260600-59278000 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:59262400-59274600 Weak transcription Placenta Amnion Placenta Amnion
12 chr1:59263400-59278200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:59264800-59275000 Weak transcription Brain Cingulate Gyrus brain
14 chr1:59265000-59280400 Weak transcription Brain Hippocampus Middle brain
15 chr1:59265400-59278600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:59265400-59279200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:59268600-59280400 Weak transcription Colon Smooth Muscle Colon
18 chr1:59269000-59274600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:59269000-59274600 Weak transcription HMEC breast
20 chr1:59269000-59275000 Weak transcription Pancreas Pancrea
21 chr1:59269400-59274800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:59270200-59280000 Weak transcription Stomach Smooth Muscle stomach
23 chr1:59270600-59276200 Enhancers Primary B cells from peripheral blood blood
24 chr1:59270600-59279400 Weak transcription Right Ventricle heart
25 chr1:59271000-59279200 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr1:59271600-59277200 Weak transcription Gastric stomach
27 chr1:59272000-59275000 Weak transcription HSMM muscle
28 chr1:59272200-59274800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:59272200-59275000 Weak transcription Esophagus oesophagus
30 chr1:59272200-59277200 Weak transcription Stomach Mucosa stomach
31 chr1:59272400-59274600 Enhancers Rectal Mucosa Donor 29 rectum
32 chr1:59272600-59274600 Weak transcription Fetal Intestine Large intestine
33 chr1:59272600-59275000 Weak transcription Fetal Intestine Small intestine
34 chr1:59272600-59279200 Weak transcription Duodenum Mucosa Duodenum
35 chr1:59273200-59278200 Weak transcription Primary T cells from cord blood blood
36 chr1:59273200-59278200 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:59273200-59278200 Weak transcription Spleen Spleen
38 chr1:59273400-59275000 Weak transcription Liver Liver
39 chr1:59273400-59275000 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:59273800-59279600 Enhancers HepG2 liver
41 chr1:59274000-59275600 Enhancers Lung lung
42 chr1:59274200-59274400 Enhancers Colonic Mucosa Colon
43 chr1:59274200-59274800 Weak transcription Primary B cells from cord blood blood
44 chr1:59274200-59274800 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr1:59274200-59274800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:59274200-59275000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr1:59274200-59276600 Weak transcription Aorta Aorta
48 chr1:59274200-59278400 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015