The 2.0 version of rSNPBase

Variant report

Variant rs72911559
Chromosome Location chr1:59282907-59282908
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59279800-59283400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:59282000-59283000 Active TSS Fetal Brain Male brain
3 chr1:59282400-59283000 Enhancers Sigmoid Colon Sigmoid Colon
4 chr1:59282400-59283200 Enhancers Stomach Mucosa stomach
5 chr1:59282400-59284200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:59282400-59284400 Enhancers HSMM muscle
7 chr1:59282400-59284600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:59282400-59284600 Enhancers HMEC breast
9 chr1:59282400-59285000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:59282400-59285000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:59282400-59285800 Enhancers NHEK skin
12 chr1:59282400-59286000 Enhancers Muscle Satellite Cultured Cells --
13 chr1:59282400-59286000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:59282400-59286000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:59282400-59287000 Weak transcription Esophagus oesophagus
16 chr1:59282400-59289200 Weak transcription Placenta Placenta
17 chr1:59282400-59289800 Weak transcription Gastric stomach
18 chr1:59282400-59290200 Weak transcription Lung lung
19 chr1:59282400-59290400 Weak transcription Pancreas Pancrea
20 chr1:59282400-59293800 Weak transcription Aorta Aorta
21 chr1:59282600-59283000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:59282600-59283000 Enhancers Breast Myoepithelial Primary Cells Breast
23 chr1:59282600-59283000 Enhancers Primary monocytes fromperipheralblood blood
24 chr1:59282600-59283000 Enhancers Primary neutrophils fromperipheralblood blood
25 chr1:59282600-59283000 Enhancers Primary B cells from peripheral blood blood
26 chr1:59282600-59283000 Enhancers Primary T cells from cord blood blood
27 chr1:59282600-59283000 Enhancers Primary hematopoietic stem cells blood
28 chr1:59282600-59283000 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr1:59282600-59283000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
30 chr1:59282600-59283000 Enhancers Primary T helper cells fromperipheralblood blood
31 chr1:59282600-59283000 Enhancers Brain Substantia Nigra brain
32 chr1:59282600-59283000 Enhancers Duodenum Mucosa Duodenum
33 chr1:59282600-59283000 Enhancers Skeletal Muscle Female skeletal muscle
34 chr1:59282600-59283000 Enhancers Stomach Smooth Muscle stomach
35 chr1:59282600-59283200 Enhancers Primary Natural Killer cells fromperipheralblood blood
36 chr1:59282600-59283200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr1:59282600-59283200 Enhancers Fetal Adrenal Gland Adrenal Gland
38 chr1:59282600-59283600 Weak transcription Fetal Lung lung
39 chr1:59282600-59284000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:59282600-59284000 Enhancers Hela-S3 cervix
41 chr1:59282600-59285200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:59282600-59285800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:59282600-59285800 Enhancers NH-A brain
44 chr1:59282600-59285800 Enhancers NHDF-Ad bronchial
45 chr1:59282600-59285800 Enhancers NHLF lung
46 chr1:59282600-59285800 Enhancers Osteobl bone
47 chr1:59282600-59286000 Enhancers HUVEC blood vessel
48 chr1:59282600-59287000 Weak transcription Left Ventricle heart
49 chr1:59282600-59288800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr1:59282600-59290200 Weak transcription Ovary ovary

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Last update: Aug 31, 2015