Variant report

Variant	rs72947992
Chromosome Location	chr3:115998265-115998266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10212348	1.00[EUR][1000 genomes]
rs10212349	1.00[EUR][1000 genomes]
rs10212350	1.00[EUR][1000 genomes]
rs10212351	1.00[EUR][1000 genomes]
rs11914439	1.00[EUR][1000 genomes]
rs11927187	1.00[EUR][1000 genomes]
rs13067904	1.00[EUR][1000 genomes]
rs1381071	1.00[EUR][1000 genomes]
rs1563936	1.00[EUR][1000 genomes]
rs1563939	1.00[EUR][1000 genomes]
rs16824706	1.00[EUR][1000 genomes]
rs1882011	1.00[EUR][1000 genomes]
rs1920361	1.00[EUR][1000 genomes]
rs35319164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4277686	1.00[EUR][1000 genomes]
rs6438298	1.00[EUR][1000 genomes]
rs6768516	1.00[EUR][1000 genomes]
rs6781359	1.00[EUR][1000 genomes]
rs6785857	1.00[AMR][1000 genomes]
rs6796602	1.00[EUR][1000 genomes]
rs72959750	1.00[EUR][1000 genomes]
rs72959752	1.00[EUR][1000 genomes]
rs9283565	1.00[EUR][1000 genomes]
rs9289043	1.00[EUR][1000 genomes]
rs9289044	1.00[EUR][1000 genomes]
rs9818490	1.00[EUR][1000 genomes]
rs9830788	1.00[EUR][1000 genomes]
rs9835051	1.00[EUR][1000 genomes]
rs9856732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115985400-115999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115989200-115999000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:115992200-115999200	Weak transcription	Fetal Lung	lung
5	chr3:115995800-115999000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:115995800-115999000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:115996000-115999000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:115996000-115999000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:115996000-115999200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:115996000-115999200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:115996600-115999400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:115996800-115999000	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:115996800-115999400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:115998200-115998400	Enhancers	Brain Hippocampus Middle	brain
16	chr3:115998200-115998400	Enhancers	Brain Substantia Nigra	brain
17	chr3:115998200-115999000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:115998200-115999000	Weak transcription	Brain Anterior Caudate	brain
19	chr3:115998200-115999000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:115998200-115999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:115998200-115999600	Enhancers	Fetal Brain Female	brain
22	chr3:115998200-116006000	Weak transcription	Brain Germinal Matrix	brain

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