Variant report
| Variant | rs72952744 |
|---|---|
| Chromosome Location | chr3:118213376-118213377 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs56866972 | 1.00[EUR][1000 genomes] |
| rs57134784 | 1.00[EUR][1000 genomes] |
| rs58015270 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58345262 | 1.00[EUR][1000 genomes] |
| rs58790760 | 1.00[EUR][1000 genomes] |
| rs58932847 | 1.00[EUR][1000 genomes] |
| rs72952707 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72952723 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72952746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72952750 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72952759 | 1.00[EUR][1000 genomes] |
| rs72952762 | 1.00[EUR][1000 genomes] |
| rs72952776 | 1.00[EUR][1000 genomes] |
| rs72952781 | 1.00[EUR][1000 genomes] |
| rs72952785 | 1.00[EUR][1000 genomes] |
| rs72952786 | 1.00[EUR][1000 genomes] |
| rs72952799 | 1.00[EUR][1000 genomes] |
| rs72952801 | 1.00[EUR][1000 genomes] |
| rs72954887 | 1.00[EUR][1000 genomes] |
| rs72954902 | 1.00[EUR][1000 genomes] |
| rs72956905 | 1.00[EUR][1000 genomes] |
| rs72956907 | 1.00[EUR][1000 genomes] |
| rs72956913 | 1.00[EUR][1000 genomes] |
| rs72956917 | 1.00[EUR][1000 genomes] |
| rs72956992 | 1.00[EUR][1000 genomes] |
| rs72958913 | 1.00[EUR][1000 genomes] |
| rs72958917 | 1.00[EUR][1000 genomes] |
| rs72958920 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460829 | chr3:118195601-118229370 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv591349 | chr3:118195601-118229370 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv829690 | chr3:118205361-118378010 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv965435 | chr3:118213069-118220612 | Enhancers Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:118208400-118223400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr3:118210800-118220000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
