Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56866972	1.00[EUR][1000 genomes]
rs57134784	1.00[EUR][1000 genomes]
rs58015270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58345262	1.00[EUR][1000 genomes]
rs58790760	1.00[EUR][1000 genomes]
rs58932847	1.00[EUR][1000 genomes]
rs72952707	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72952723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952759	1.00[EUR][1000 genomes]
rs72952762	1.00[EUR][1000 genomes]
rs72952776	1.00[EUR][1000 genomes]
rs72952781	1.00[EUR][1000 genomes]
rs72952785	1.00[EUR][1000 genomes]
rs72952786	1.00[EUR][1000 genomes]
rs72952799	1.00[EUR][1000 genomes]
rs72952801	1.00[EUR][1000 genomes]
rs72954887	1.00[EUR][1000 genomes]
rs72954902	1.00[EUR][1000 genomes]
rs72956905	1.00[EUR][1000 genomes]
rs72956907	1.00[EUR][1000 genomes]
rs72956913	1.00[EUR][1000 genomes]
rs72956917	1.00[EUR][1000 genomes]
rs72956992	1.00[EUR][1000 genomes]
rs72958913	1.00[EUR][1000 genomes]
rs72958917	1.00[EUR][1000 genomes]
rs72958920	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv965435	chr3:118213069-118220612	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118208400-118223400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:118210800-118220000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:118215800-118216400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:118215800-118216600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:118216200-118216600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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