Variant report
| Variant | rs72956992 |
|---|---|
| Chromosome Location | chr3:118364607-118364608 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:118363907..118366205-chr3:118367302..118368823,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs56866972 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57134784 | 1.00[EUR][1000 genomes] |
| rs58015270 | 1.00[EUR][1000 genomes] |
| rs58345262 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58790760 | 1.00[EUR][1000 genomes] |
| rs58932847 | 1.00[EUR][1000 genomes] |
| rs72952723 | 1.00[EUR][1000 genomes] |
| rs72952744 | 1.00[EUR][1000 genomes] |
| rs72952746 | 1.00[EUR][1000 genomes] |
| rs72952750 | 1.00[EUR][1000 genomes] |
| rs72952759 | 1.00[EUR][1000 genomes] |
| rs72952762 | 1.00[EUR][1000 genomes] |
| rs72952776 | 1.00[EUR][1000 genomes] |
| rs72952781 | 1.00[EUR][1000 genomes] |
| rs72952785 | 1.00[EUR][1000 genomes] |
| rs72952786 | 1.00[EUR][1000 genomes] |
| rs72952799 | 1.00[EUR][1000 genomes] |
| rs72952801 | 1.00[EUR][1000 genomes] |
| rs72954887 | 1.00[EUR][1000 genomes] |
| rs72954902 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72956905 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72956907 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72956913 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72956917 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72958913 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72958917 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72958920 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829690 | chr3:118205361-118378010 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:118364400-118365600 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
