Variant report

Variant	rs72952799
Chromosome Location	chr3:118306260-118306261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56866972	1.00[EUR][1000 genomes]
rs57134784	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58015270	1.00[EUR][1000 genomes]
rs58345262	1.00[EUR][1000 genomes]
rs58790760	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58932847	1.00[EUR][1000 genomes]
rs72952723	1.00[EUR][1000 genomes]
rs72952744	1.00[EUR][1000 genomes]
rs72952746	1.00[EUR][1000 genomes]
rs72952750	1.00[EUR][1000 genomes]
rs72952759	1.00[EUR][1000 genomes]
rs72952762	1.00[EUR][1000 genomes]
rs72952776	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72952781	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72952783	0.89[AFR][1000 genomes]
rs72952785	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72952786	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72952801	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72954887	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72954902	1.00[EUR][1000 genomes]
rs72956905	1.00[EUR][1000 genomes]
rs72956907	1.00[EUR][1000 genomes]
rs72956913	1.00[EUR][1000 genomes]
rs72956917	1.00[EUR][1000 genomes]
rs72956992	1.00[EUR][1000 genomes]
rs72958913	1.00[EUR][1000 genomes]
rs72958917	1.00[EUR][1000 genomes]
rs72958920	1.00[EUR][1000 genomes]
rs9289109	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118291800-118306800	Weak transcription	GM12878-XiMat	blood
2	chr3:118305800-118306600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:118305800-118307000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:118305800-118307400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:118305800-118307400	Enhancers	HMEC	breast
6	chr3:118306000-118309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:118306200-118307000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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